Gene detail

Gene detail information of Glyur000049s00003109.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G60030.1	squamosa promoter-binding protein-like 12
NR	XP_004494461.1	PREDICTED: squamosa promoter-binding-like protein 12-like [Cicer arietinum]
Swissprot	tr\|Q9S7P5\|SPL12_ARATH	Squamosa promoter-binding-like protein 12
trEMBL	tr\|G7KUJ2\|G7KUJ2_MEDTR	Squamosa promoter-binding-like protein {ECO:0000313\|EMBL:AES82254.2}

Sequence

Transcript Sequence

>Glyur000049s00003109.1
CATTACCATAACCCTTTCCTTGTCACGCAAAGAATTCACNTTCACATTCATCTTCCCCCATCCATCGCCATCATCATCAACACACCTCTTTCCCTCTCCCTCCTTCCACCGAAACCGTACTTGGCNCACTTTCCGAATTTCACTCACCGTCGATCTGCTCTCACACACTCTTCACCTTTTTGCTTTGCTTCATAAGGTTGAGCTCCTCCTTCTTCAATCCCAATTTATCTTTCTGTACTTGTAGTTGACTTCAATTTTCTTCGGGAAGGGGAAGGTTGTGCCTAATTAGCTATGTGGATTTTGCTTAATTGGAGGANCCATGGTTGCGTCGGTGTGCTCTTTCTTGATTCTCTCGGGAAGAACCGAAGCTGATTAATTCGGATTCCTTTACTGTTGCTTAGATTTTAGTATTGGTTGTTGTGTTTGTTTGAAATTCTGTTGTTGAGTTGTGATCATGGAAGCTAGATTTGGCACTGAAGCTTTTCATTTGTACGGCATGGGTGGTGGTTCCTCTGATCTGAGGGCTATGGGGAAGAGACCGTTGGAGTGGGATTTGAATGATTGGAAATGGGACGGTGATCTTTTCATAGCTAGGAGGTTGAGTCCTGTGCCTGAGCACAGGCAATTTTTACCTGTTCCTGGGGGTTCCTCTAACTCAAACAGTTCATCTTCTTGCTCTGAAGAGGTGGTAGATCTTGGGATTCGTGAGGGGAACAAGAAAGGGGAGAGGAAGAGGAGGGTTATTGTGGTGGAGGATGAACAGGAAGCGGGTAGCCTCAGCTTAAAGCTTGGTGGTGGTGGTGCTGCTCCTGCTCAAATTGCTGCTACCTGGGATGGAACCAACGGGAAGAAGAGTAGAGTGGGTGGAGGTAGCTCCAATCGAGCACTTTGTCAGGTGGAGGATTGTGGCGCAGATCTCAGCAATGCTAAGGATTATCACAGACGTCATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAAGGCCCTTGTGGGAAATGCAATGCAGCGGTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAGGAGTTNGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCATAATAAAAGGAGGAGGAAAACGAATCAGGATGCTGTTCCTAATGGAAGTTCAATGAACGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCGTTCTGACAGGTCAGATCAGACNGCAGATCAGGATCTGCTAACTCATCTTTTAAGGAGTCTTGCTAATCAGAATGGTGAACAAGGGGGCAAGAACTTGTCTAACCTTTTGCGGGAACCAGAGAATTTGTTGAAAGGAGGGAGTTCATCTGGGAAGTCTGAGATGGTTTCTAATTTATTTACTAATGGTTCCCAAGGTTCTCCAACTGTTACAAGACAGCATCAAACAGTTTCTATTAGTGAAATTCAGCGTCAAGTGATGCATGCACATGATGCTAGGGTGGCTGATCAACAAACCATGTCTTCTACAAAGCCCAGTATTTCAAATAGCCCTCCAGCTTACTCAGAAGCCAGAGATAGTANTGCTGGACAGACCAAGATGAATAATTTTGATCTGAATGACATCTATATTGACTCAGACGATGGCATAGAAGACATAGAAAGGTTGCCTGTCTCTGCAAATCTTGGTACTGGCTCTCTTGATTACCCATGGATGCAACAAGATTCACGTCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAATCCCCTTCTAGTTTCAGTGGAGAAGCTCAGAGCCGCACAGATCGAATTGTTTTCAAACTCTTTGGTAAAGAACCGAGTGATTTTCCTCTTGTACTTAGAGCACAGATCCTTGACTGGTTATCCCACAGTCCAACTGAAATTGAGAGCTATATACGGCCTGGTTGTATCGTTTTGACTATTTATCTGCGTCAGGCTGAGGTTGTGTGGGAGGAAGTAAGCATTATCCTTCTAAAACTATCAGATGGTCTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTTTTGGATGTCTCGGATGATGCTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAGGTTGTCATGGATACATCCCTACCTTTCAGAAGTAACAACTATAGTAAGATTTTGAGTGTTAGTCCAATTGCTGTACCAGCATCAAAGACAGCTCAGTTCTCTGTTAAGGGTATCAACCTGCTTCGCCCTGCCACTAGGTTGTTGTGTGCTTTAGAAGGGAATTATTTGGTCTGTGAAGATGCTCGTGAGTCTATGGATCAATGCTCCAAGGATCTTGATGAGCTTCAGTGTGTCCAGTTTTCATGTTCTGTTCCTATTGAGGACCAGGGTTTGAGCAGCAGCTTTTTTCCTTTCATAGTTGTAGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAGCCTTTGCTAGAATCAAGTGATACTGATNCAGAGATTGAAGGGACTGGAAAAATTCAAGCCAAAAATCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAAATGAAATCTAGGATGGTTCACTTGAATTATAGTGCTGGTGCAGATCTGTTTCCATTAGATCGATTCAAGTGGCTCATGGAGTTCTCGATGGACCATGATTGGTGTGCAGTAGTTAAAAAACTATTGAACCTCCTGCTTGATGGAACTGTGAATACAGGCGACCACACATCCTTGTATCTTGCACTTTCAGATATGGCTCTCCTTCACAGAGCTGTGAGGAGAAATAGCAGGCAGTTGGTGGAGCTTCTTTTGACATATGTTCCCGAGAATGTTTCTGATAAACTAGGACCTGAGGACAAGGCACTGGTTGATGGAGAGAATCAGAGCTTCTTGTTTGGACCTGATGTTGTTGGTCCTGCTGGTTTGACACCACTTCATATAGCAGCTGGGAAAGATGGTTCAGAGGATGTACTGGATGCTTTAACTAATGATCCAAACATGGTGGGAATTGAAGCATGGAAGAGTGCTCGTGACAGCACGGGCTCCACACCTGAGGATTATGCACGTTTACGTGGTCATTATACTTACATTCACTTGGTGCAAAGGAAAATCAACAAGAGACAAGGAGGGGCTCATGTGGTGGTTGAGATTCCCAGCAATCTGACAAGTTTCAATGCAAACCAGAAGCAAGATGAATCGTCCACTACTACCTTTGAGATTGGAAAGACTGAAGTCAGAAGTGTCCAAAAGCACTGCAAACTTTGTGATCATAAGTTGTCTTGTAGAACTTCTGTAGGGAGGAGGTCTTTGGCATACAGACCTGCAATGCTGTCAATGGTGGCCATAGCAGCAGTGTGTGTGTGTGTGGCTCTTCTGTTTAAAAGCTCACCCGAAGTTCTGTATGTATTCCAACCCTTCAGGTGGGAATCGTTGGAGTTCGGAACAAGCTGAGGTTCATTAACTCAACTTAAATTTGATATAGGCAATGTAATAGGATGCGTTCATATATACTGTA

Protein Sequence

>Glyur000049s00003109.1
MEARFGTEAFHLYGMGGGSSDLRAMGKRPLEWDLNDWKWDGDLFIARRLSPVPEHRQFLPVPGGSSNSNSSSSCSEEVVDLGIREGNKKGERKRRVIVVEDEQEAGSLSLKLGGGGAAPAQIAATWDGTNGKKSRVGGGSSNRALCQVEDCGADLSNAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHLLQEXDEGKRSCRRRLAGHNKRRRKTNQDAVPNGSSMNDDQTSSYLLISLLKILSNMRSDRSDQTADQDLLTHLLRSLANQNGEQGGKNLSNLLREPENLLKGGSSSGKSEMVSNLFTNGSQGSPTVTRQHQTVSISEIQRQVMHAHDARVADQQTMSSTKPSISNSPPAYSEARDSXAGQTKMNNFDLNDIYIDSDDGIEDIERLPVSANLGTGSLDYPWMQQDSRQSSPPQTSGNSDSASAQSPSSFSGEAQSRTDRIVFKLFGKEPSDFPLVLRAQILDWLSHSPTEIESYIRPGCIVLTIYLRQAEVVWEEVSIILLKLSDGLCYDLTSSLNRLLDVSDDAFWRTGWVHIRVQHQIAFIFNGQVVMDTSLPFRSNNYSKILSVSPIAVPASKTAQFSVKGINLLRPATRLLCALEGNYLVCEDARESMDQCSKDLDELQCVQFSCSVPIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLESSDTDXEIEGTGKIQAKNQAMDFIHEMGWLLHRSQMKSRMVHLNYSAGADLFPLDRFKWLMEFSMDHDWCAVVKKLLNLLLDGTVNTGDHTSLYLALSDMALLHRAVRRNSRQLVELLLTYVPENVSDKLGPEDKALVDGENQSFLFGPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPNMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQRKINKRQGGAHVVVEIPSNLTSFNANQKQDESSTTTFEIGKTEVRSVQKHCKLCDHKLSCRTSVGRRSLAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFQPFRWESLEFGTS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	58660	65956	+

Gene family

Gene family	subfamily
Transcription Factors Family	SBP
EAR motif-containing Proteins	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003109.1	PF03110.9	SBP	146	222	2.60E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.878
SRR1783600	control	18.958
SRR1783602	moderate drought stress	24.604
SRR1811619	moderate drought stress	24.698

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.318
DRR006520	Root Summer glycyrrhizin high producing strain	31.038
DRR006521	Root Winter glycyrrhizin high producing strain	29.055
DRR006522	Root Winter glycyrrhizin high producing strain	28.575
DRR006523	Root Summer glycyrrhizin low producing strain	37.783
DRR006524	Root Summer glycyrrhizin low producing strain	38.135
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.130
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.022
SRR2868004	Drought Stress (root)	58.108
SRR2967015	Control (root)	64.162

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.244
SRR9715740	Leaf	41.116
SRR9715741	Leaf	40.388
SRR9715739	Root	17.813
SRR9715742	Root	51.204
SRR9715743	Root	42.499

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.211
SRR8749028	MeJA induced 9h	26.954
SRR8749029	MeJA induced 9h	12.467
SRR8749030	Uninduced	13.935
SRR8749031	Uninduced	8.766
SRR8749032	Uninduced	10.315

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.358
SRR8400027	Control - Root	44.532