Gene detail

Gene detail information of Glyur000049s00003101

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47020.1	6.00E-157	Peptide chain release factor 1
NR	XP_003520768.1	0	PREDICTED: peptide chain release factor 1-like, mitochondrial-like [Glycine max]
COG	YP_004679650.1	1.00E-127	protein chain release factor A [Candidatus Midichloria mitochondrii IricVA]
Swissprot	tr\|Q8RX79\|APG3_ARATH	3.00E-77	Peptide chain release factor APG3, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|K7KGG4\|K7KGG4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G38240.3}

Sequence

Transcript Sequence

>Glyur000049s00003101.1
AAAAAACTCTGCTGAACGCGAAAAACACAGANGAGAATCTCAAAAAACAGAGAAGGAAGAAGCAGCTCAGGGATTTTTTTTTTCATTTCAGCAGAAGAGATAGAAACTAGAAAAAAAAAAGCATTAACGATGAGAACTCCTGGTAGGTTTATCATTCGCCATTGTTTTTCTCAGTTGCGGAAGCAATTCGAATCAAAGTCCGAACTCCCACTCCATAATTTCCAGCTTCGTCCTCCATTTTTCCGTCGTCCTTATTCCACCGAAGTGCAACCTCAACTGTCACCGGACCTCTTAAACATAATGGAACAAAGACTCTCCGCTATTGAGTACANGACTGCTTGTCTTAACAATCTTCTAAATAAGCCAGAAGCATCACCGGCAGAGTATGCAAGAGCTAACAAGGAGCTTCGAAGGCTGAGTGGTTCTGTGGATCTTATTAATGCTTTGAGGGCCAAACAGAAGGAAATTGATGGCTTGAAGTCACTAATTGCTGAATGTTCTGAAGATAAAGACATGCNTAATATGGCAACAGAGGAAATGAGCCAGGCCATAGAGGAAGAAAGAAGACTGCAAAATTTGCTGCTGAAGTCATTACTTCCTAAGGATGATGCTGATGAAAGGGATTCCATTTTGGAGGTACGAGCAGGCACTGGTGGGGAGGAGGCTTCTTTGTTTGCAATGGATATCTTTAAAATGTACGAGAGGTATGCTCACAAGAATGGCTGGAGGTTTGAAGTAGTAGATATAGCTCAGTCTGATCTAAAGGGATACAAGGAGGCTAGTGCATCAATTGCAGGAGTCGGTGTTTTTGGGAAACTAAAATTTGAGAGTGGAATTCATAGAGTACAGCGAGTTCCTGTGACCGAAAAGTCAGGACGCGTTCATACCAGTGCTGTTTCTGTTGCAATCCTTCCTCAGGCTGATGAGGTAGATGTTCAATTGAAGAATGAAGACTTAAAAATTGATACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACTAACAGTGCTGTTAGAATAACGCACATTCCAACAGGGATTGTGGTTGCTATACAAGATGACCGTTCTCAGCATATGAACAAGGCCAAAGCTCTCAAGCTACTGTGTGCAAAGCTATATGAAATGGAAAGGTTGAGACTTCACAGTAGTCGATCAAAGCTTCGAGCAGCGCAGATTGGTAGTGGGGACAGATCTGAACGCATCCGAACATACAATTTTCCTCAAGGCCGTGTAACAGATCATAGAGTTGGTATCACTTATCACTCGATAGACGACGTGATGCAAGGAGAGAATCTTGATGTCTTCATTGATGCTCTTCTCTTGCAAGAAGAAATGGATGCAATTGCAACTTTTAGTTCTTCTCAGTAAAGCCAGTGCCTGGATTTAATTTTTGCGTTCAATGTTTTATTTTTGTAATTCACTTACCGAAAGGAAAAAGTTCCGTATTTTGCGTGAGATGCTAGGCAGGGGAAGAACATAGCACAAAATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	5350	9660	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006415 translational termination

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003747 translation release factor activity

GO:0016149 translation release factor activity, codon specific

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003101.1	PF03462.13	PCRF	120	233	5.10E-34
Glyur000049s00003101.1	PF00472.15	RF-1	264	375	8.50E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.656
SRR1783600	control	3.564
SRR1783602	moderate drought stress	4.389
SRR1811619	moderate drought stress	4.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.873
DRR006520	Root Summer glycyrrhizin high producing strain	8.672
DRR006521	Root Winter glycyrrhizin high producing strain	12.078
DRR006522	Root Winter glycyrrhizin high producing strain	11.772
DRR006523	Root Summer glycyrrhizin low producing strain	7.688
DRR006524	Root Summer glycyrrhizin low producing strain	8.005
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.383
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.498

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.743
SRR2868004	Drought Stress (root)	5.880
SRR2967015	Control (root)	5.477

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.862
SRR9715740	Leaf	5.525
SRR9715741	Leaf	4.012
SRR9715739	Root	0.258
SRR9715742	Root	1.543
SRR9715743	Root	2.348

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.293
SRR8749028	MeJA induced 9h	4.057
SRR8749029	MeJA induced 9h	4.004
SRR8749030	Uninduced	3.445
SRR8749031	Uninduced	2.084
SRR8749032	Uninduced	0.985

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.208
SRR8400027	Control - Root	7.828