Gene detail information of Glyur000049s00003100 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75250.2 | 2.00E-12 | RAD-like 6 |
| NR | XP_007163238.1 | 2.37E-51 | hypothetical protein PHAVU_001G217600g [Phaseolus vulgaris] |
| Swissprot | tr|Q6NNN0|RADL3_ARATH | 5.00E-16 | Protein RADIALIS-like 3 |
| trEMBL | tr|V7CYI9|V7CYI9_PHAVU | 9.00E-52 | Uncharacterized protein {ECO:0000313|EMBL:ESW35232.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 3417 | 3707 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.039 |
| SRR1783600 | control | 23.780 |
| SRR1783602 | moderate drought stress | 25.507 |
| SRR1811619 | moderate drought stress | 38.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.358 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.701 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.030 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 67.046 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.873 |
| SRR2868004 | Drought Stress (root) | 46.460 |
| SRR2967015 | Control (root) | 77.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.279 |
| SRR9715740 | Leaf | 0.427 |
| SRR9715741 | Leaf | 0.713 |
| SRR9715739 | Root | 12.879 |
| SRR9715742 | Root | 7.069 |
| SRR9715743 | Root | 6.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.565 |
| SRR8749029 | MeJA induced 9h | 0.223 |
| SRR8749030 | Uninduced | 0.117 |
| SRR8749031 | Uninduced | 0.384 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.315 |
| SRR8400027 | Control - Root | 33.866 |