Gene detail

Gene detail information of Glyur000048s00002283

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39330.1	2.00E-139	cinnamyl alcohol dehydrogenase 9
NR	O82515.1	0	RecName: Full=Probable mannitol dehydrogenase; AltName: Full=NAD-dependent mannitol dehydrogenase [Medicago sativa]
COG	NP_386798.1	7.00E-123	zinc-type alcohol dehydrogenase [Sinorhizobium meliloti 1021]
Swissprot	tr\|O82515\|MTDH_MEDSA	0	Probable mannitol dehydrogenase
trEMBL	tr\|Q53X16\|Q53X16_MEDSA	0	Cinnamyl-alcohol dehydrogenase {ECO:0000313\|EMBL:AAL34328.1}

Sequence

Transcript Sequence

>Glyur000048s00002283.1
TAGAAAAGAAGAGTCGAGAAGAGAGAAATGGCAGAATCTCCCGAAACGGAACTCCCACTCAAAGCTTTTGGTTGGGCTGCTACAGACACTTCTGGCGTCCTCTCTCCCTTCCATTTCTCCAGAAGGGAAAATGGCGATGATGACGTCACTCTCAAAATTCTNTTCTGTGGGGTTTGCCATTCTGATCTGCACACTGTCAAGAACGATTGGGGTTTCACAACTTACCCTGTTGTTCCCGGGCATGAAATTGTTGGTGTTGTGACAAGTACTGGAAACAATGTGGAAAAATTCAAAGTGGGTGATAGAGTTGGAGTTGGTGTAATTGTGGACTCTTGTAAGGCATGTGAGAATTGCCAGCAGGATCTGGAGAGTTACTGTCCTCTACCTGTATTCACCTATAACTCTCCTTATAATGGGACACGGACCCAAGGTGGCTATTCTGATTTCGTGGTTGTTCACCAGCGGTATGTACTCCAGTTTCCCGACAACTTACCCCTTGATGCTGGTGCTCCACTACTGTGTGCTGGGATTACTGTGTATAGCCCAATGAAATATTATGGGATGACAGAGCCAGGCAAACATTTGGGAGTGGCGGGGCTTGGTGGGTTAGGGCATGTTGCAATCAAATTCGGTAAAGCATTTGGGCTGAAGGTTACTGTCATTAGTAGCTCTCCAAACAAGGAATCTGAGGCCATTGACAAACTTGGGGCTGATTCTTTCCTCATTTCCTCAGACCATGAAAAAATGAAGGCTGCTATGGGAACCCTGGACTATATCATAGACACAATTTCTGCTAATCATTCCCTGATTCCACTGCTTGGCCTCCTGAAGCTGAACGGGAAGCTGGTCACTGTGGGGTTGCCTAGCAAGCCCCTTGAGCTCCCTGTCTTTCCATTAGTTGCAGGACGGAAGCTTGTAGGGGGTAGCAACTTCGGAGGGTTAAAGGAGACTCAGGAGATGCTTGAATTCTGCGGAAAGCACAACATAACTGCAGATATTGAGCTGATTAAGATGGACCAAATCAACACAGCCATGGAAAGGCTTAGCAAAGCTGATGTCAAATATCGCTTTGTGATTGATGTGGCCAACTCCTTCTCAAGTTTGTAGAGGCCTCCTTGATTCTTCCTCTCTTTGCGAGTGAAGCTTTGGATTGGATGTCTCATTATATTGGGAAATAGGTTAAANTTGCTGTAAGATGCCCAACTTTAGAGATGAGACCACCCTCTATTTTCTCCTATTAAATACTTTGGATTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	491905	495408	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00083	E1.1.1.195	EC:1.1.1.195	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002283.1	PF08240.7	ADH_N	38	150	8.40E-29
Glyur000048s00002283.1	PF00107.21	ADH_zinc_N	193	315	2.00E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.451
SRR1783600	control	9.532
SRR1783602	moderate drought stress	13.067
SRR1811619	moderate drought stress	13.102

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.849
DRR006520	Root Summer glycyrrhizin high producing strain	9.853
DRR006521	Root Winter glycyrrhizin high producing strain	3.548
DRR006522	Root Winter glycyrrhizin high producing strain	3.551
DRR006523	Root Summer glycyrrhizin low producing strain	7.795
DRR006524	Root Summer glycyrrhizin low producing strain	7.787
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.978
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.959

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.852
SRR2868004	Drought Stress (root)	2.677
SRR2967015	Control (root)	4.447

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.875
SRR9715740	Leaf	21.312
SRR9715741	Leaf	22.254
SRR9715739	Root	3.148
SRR9715742	Root	10.348
SRR9715743	Root	9.876

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.652
SRR8749028	MeJA induced 9h	4.774
SRR8749029	MeJA induced 9h	3.239
SRR8749030	Uninduced	3.997
SRR8749031	Uninduced	0.488
SRR8749032	Uninduced	2.792

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.606
SRR8400027	Control - Root	17.207