Gene detail

Gene detail information of Glyur000048s00002265.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22140.1	2.00E-101	essential meiotic endonuclease 1B
NR	XP_004503990.1	0	PREDICTED: crossover junction endonuclease EME1B-like isoform X1 [Cicer arietinum]
Swissprot	tr\|C5H8J1\|EME1B_ARATH	7.00E-147	Crossover junction endonuclease EME1B
trEMBL	tr\|G7LC63\|G7LC63_MEDTR	0	Crossover junction endonuclease EME1 {ECO:0000313\|EMBL:AET04622.2}

Sequence

Transcript Sequence

>Glyur000048s00002265.1
ATGATCCCGCGCTTATTTCGAAGACGGAAACCAGCNGAGTAGCATAGCGGAGGCGCGCTCATAGTCATAACGATGGAACCCATTATCCTTTCCGACGAAGACGACCCCTCAACGCCATTCCCGCTCCATTCCAAGAAGCGCCGAACCGGACCCGGTCCAAACCCAACCGTTCTCATCGTCGACGACGACCCGACCCCACAGAAGCAACATGTTCCTTCGTCCACACCTTCCGTCGTCGCCGAGACTCCAATGTCCCCTCTATTGGATTCCGAAGTTGCAATCGTCAAATGCACGAATCCTTCTGATCCCACCGTTAGGGTTTCCCCTAAAAAGCTATCGGGAATTAGTCAAATGATATGTTTGGAATCAGATGACGAGTCGGAAAATCCTGGATTGGGCAATTGGAATGATAATGAAACAAGGGGATCGTCCTTTGATCTTGCTGGAAATTCAAGGTGGACTTTNGATTCGATTGGGTCTGGAAGTTCTCCTGAAAATATTGAAAACATGAAACAATCCAAAGTTTCTGCAAATAGAAAAACCAAGGCAACCGGAAAAACAAAGATGACAAAAGAAGAAAGAAGTCGCTTGATGGAAGAAAAGAAACTACAGAAGGAACAAGAGAAGTTAAAAAAAGCAGCTCTGAAGGCCGAAGCTGCAGAACTGAAAAAAGTTGAGAAAGAAAAGCAAAAGTGGGAAAAAGGAAAGTTTGCAATAAAATCTNTTGTGGCACAAATTGATGCAAAGGTAGTCGAATCAGGTTCAATTGGAGGTCATCTGCTTACTAGGTTTGCTGAAAAAGGGCTTACATACCATATTACATCCAATCCAATCCCAGGGTCAATTTTATGGTCTATGAAAGTTCCAGAACAAATTTCACAGCTTTCTACTGAACGAATTGAGATTCCATATGTATTACTAGTTTATGAGGCCGACAAATTTTGTAACCTCGCCATGAATGATTTTCTTTTTGATCAACTCTCTAGCATTCGAAGTCATTATCCAGCTTATACAGTTTGTTACCTCACCAATAGGTTATTTTCTTACATTAATAAAAGGGAACAGGAAAAGTACAAGAACCCTGAAAACAATAGTTGTTGGAGACGTCCACCTGTTGAGGAGGTGCTAGCGAAACTAACAACTAATTTCACCAAAGTACATTCCAGGCAGTGTGTAGATGAGGCTGAACTGGCTGAACATGTTGCTGGTTTGACATGCAGCCTGGCTTCTTGTCAGTTTAGGTTAAAAGCTTTGGTTGCTATCCCCAAGGTACAGCCACGATTCGCTATCGCTATTTGGAAAAAATACCCAACCATGAAGTCCCTGTTAAGTGTTTATATGGATCCAAGTAAATCGGAGCATGAGAAGGAATTTTTACTTAAAGACTTGATGACAGAAGGCTTGCTTGGTGGTGACAGAAGGTTAGGTCAGGTTTGTTCAAAGCGAGTGTATAGAATTNTGATGGCGCAAAGGGGATCCATTAGAACAGATGATGTCGAGGATGGTGCTGATTTCTTTGAGCGTTAATCAATCATGAAGAGCTTTGTCATTGTAAGTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	394658	399828	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10882	EME1, MMS4	EC:3.1.22.-	Homologous recombination	map03440
			Fanconi anemia pathway	map03460

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0004518 nuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002265.1	PF02732.10	ERCC4	222	378	7.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.696
SRR1783600	control	2.756
SRR1783602	moderate drought stress	5.749
SRR1811619	moderate drought stress	5.760

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.813
DRR006520	Root Summer glycyrrhizin high producing strain	3.049
DRR006521	Root Winter glycyrrhizin high producing strain	2.794
DRR006522	Root Winter glycyrrhizin high producing strain	2.742
DRR006523	Root Summer glycyrrhizin low producing strain	1.737
DRR006524	Root Summer glycyrrhizin low producing strain	1.615
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.705
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.006

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.420
SRR2868004	Drought Stress (root)	6.442
SRR2967015	Control (root)	5.229

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.264
SRR9715740	Leaf	3.608
SRR9715741	Leaf	3.982
SRR9715739	Root	0.241
SRR9715742	Root	0.938
SRR9715743	Root	1.406

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.810
SRR8749028	MeJA induced 9h	12.835
SRR8749029	MeJA induced 9h	14.703
SRR8749030	Uninduced	8.672
SRR8749031	Uninduced	4.950
SRR8749032	Uninduced	4.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.559
SRR8400027	Control - Root	9.646