Gene detail

Gene detail information of Glyur000048s00002253

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39410.1	2.00E-09	WRKY DNA-binding protein 13
NR	KHN29128.1	1.88E-36	Putative WRKY transcription factor 13 [Glycine soja]
Swissprot	tr\|Q93WY4\|WRK12_ARATH	4.00E-11	Probable WRKY transcription factor 12
trEMBL	tr\|I1KTC0\|I1KTC0_SOYBN	2.00E-37	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G15210.2}

Sequence

Transcript Sequence

>Glyur000048s00002253.1
TTAAATATTTTCCGCTAGTTAATTAGTTCCCCTCCCCCCTAGCTTCTCATTTATCAATTATATATATCCTATTCAAATAAATGTCGATATAGTTAGCAACATTTTATCCCCTTCACATGTTGAGAGATATCGACAAAGACACACTTGGAAAATAGCATTCTCGAAGGAAGAGAGAGAGAGAGAGAGAGAGGCAAAAATTAAAGCAAAAAGGGAAAGTTAAATTGGTTTTGCAATGTCATATGAGTTTAAATATATGCTTCCCATTATATATATGGTCTAATCTCGTCCCAAAGGTTTGAGAGAAACCCTCTGTATAATTTGCACCAAATCTCTTGCAACTTCTATATACAGAGTGATTCTTGGGGAGAAAGAGAGAGAGATCAAAAGAAGAAGTGATCGATGTCAACAACTTCCCAAGCTATTAATGTTAACCACCACAGCTTAATATCGGAGGATCAGCAGAATCAGATGATGCCTAATATGCAAATGGGGGGCTTCAATGATATTCCTTTCCCAACAAACTTGACGACTTTCCCTCCTTGGGGTTGCAACAACAATAATCAACCTTTGAAAGCCTTCAGTTCCATGGCTTCTCCTTCACTTGCATCTGCAGAATCAGATTCCACCTCAAATCTAACAGAAACCCTACTCGCAGCAACCGCCACCACCACTGATCATCAAAAATCAATATCATCAGAATACCTCACTTCTAGCTTTGGAGGAACTCATCATCAATTCCTATCCTTGCATAGATCCAGTTTAAATCCATGGGAGCCAAGGTTTAGCTTCAAGACGATGAGCGATGTGGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTATGGACAAAAAAAGCTACTACCGATGCACACAAGACAATTGTCGGGTAAAGAAACGGGTGGAGCGGTTGGCGGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACACGTACACTCTCCATCCAATGATCTTGATGACTCTGATCAATCCCATTCACAAATATTAAACAATTTCCTATGGTAGTACACTCGTATAGTGCACACCAACTGAACACATTTAGTATATATGTGTATGTGATTAATAAATAATTACTTGTAAAGTTTATTTGTTCTTAAAGGCGTGCTTTTGTGGAGATGAAAACGGAATTATAAGTACTACTATAGAGAGCAAATAAAGGAGTGAAATGTACTTGCTCTTCCCCATCGATCCAGTAGTAGTACTGCTCCCATTTTCATCACTTCAAAGCACACCATAATTAAGACTCATGCGCTTGATTTAATTTACAATGCTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	341802	344692	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002253.1	PF03106.10	WRKY	139	153	5.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.991
SRR1783600	control	10.547
SRR1783602	moderate drought stress	11.536
SRR1811619	moderate drought stress	10.959

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.040
DRR006520	Root Summer glycyrrhizin high producing strain	29.766
DRR006521	Root Winter glycyrrhizin high producing strain	10.955
DRR006522	Root Winter glycyrrhizin high producing strain	10.758
DRR006523	Root Summer glycyrrhizin low producing strain	19.021
DRR006524	Root Summer glycyrrhizin low producing strain	19.676
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.487

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.929
SRR2868004	Drought Stress (root)	4.858
SRR2967015	Control (root)	4.947

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.217
SRR9715740	Leaf	0.236
SRR9715741	Leaf	0.438
SRR9715739	Root	0.683
SRR9715742	Root	2.469
SRR9715743	Root	2.595

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.063
SRR8749028	MeJA induced 9h	1.279
SRR8749029	MeJA induced 9h	0.527
SRR8749030	Uninduced	0.098
SRR8749031	Uninduced	0.117
SRR8749032	Uninduced	0.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.726
SRR8400027	Control - Root	10.446