Gene detail

Gene detail information of Glyur000048s00002251

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39460.2	6.00E-104	S-adenosylmethionine carrier 1
NR	XP_007159774.1	6.36E-160	hypothetical protein PHAVU_002G266200g [Phaseolus vulgaris]
Swissprot	tr\|Q94AG6\|SAMC1_ARATH	3.00E-142	S-adenosylmethionine carrier 1, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|V7CQZ3\|V7CQZ3_PHAVU	2.00E-160	Uncharacterized protein {ECO:0000313\|EMBL:ESW31768.1}

Sequence

Transcript Sequence

>Glyur000048s00002251.1
CCCTCTTTTATCTGTTGCTCTCATCTTCTCACTGACTTGTTTCATCAAAAAATTAATCTTCTCACATACTTCACCTGCGTTAGCCCTATCATCACTCTGTTCACTTCACCGTTTGTTATTCCCCAGCGGTGGTTTCGTTGGGCTTTGATGGGTCCCCTTACACTTTCCGTTACGGTGCTGCAAGACTCTGGCGTTTCATTACCTGCATGGGAGAGGAAAAGCCCTTTGACTTCTTACGCACTTTATTTGAGGGTGTTATTGCTGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCCATTGACACTATAAAAACACGTCTGCAGGCAGTTGATTTACATAGTATAATGGACTTTTCTGAACCAGCTGCTCGCGGAGGAGAAAAACTAATATTTAAAGGCCTTTATTCTGGANTGGCAGGGAACCTTGCTGGTGTCTTACCGGCGTCTGCTCTATTTGTTGGAATTTATGAACCTATAAAGCAGAAACTGCTAAGGATGTTTCCTGAAAATCTGAGTGCTTTTGCTCATTTTACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGGTNCGTGTTCCAACAGAGGTTGTCAAACAACGAATGCAAACCGGGCAGTTTACTTCAGCTCCTGGAGCTGTTCGCTTTATTGCGTCTAGGGAAGGCTTTAAAGGATTTTATGCTGGGTATGGATCTTTTTTACTGCGGGATTTGCCCTTTGATGCTATTCAGTTTTGCATCTACGAGCAGATTCGAATGGGTTATATGCTTGCGGCACGTAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCACTAACTGGAGCTATAACCACCCCCCTTGATGTCATNAAGACAAGGTTAATGGTTCAGGGTATTGGGCCAAGAGTACTATGGATAGGCATTGGTGGTTCAATATTCTTTGGCGTTCTTGAGGGTACAAAACGTTTCCTTGCGGTGAGGCGTCCTGTATTAGCTCAGTGCACAAACTCAGAAACTCAGATAAAAAGCAAAGATTAAGAAATTCTGTCCCAGCTTTTTTTTATTTCACTCTCCCCTTGGTGCAATTTTCTAGATGCTTAAATATAGTATACTCTGTATACTTTTTTATTTTTCAATTTTAAGCATTGGAAGCAAGATTTTATCTGGTTATTTCCCCCTCCTGCTTGTCCGTGGGGGCCTTGTTCGAGGTTGGCCAACTGCTAAAAAGTGGGTTTTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	293716	300138	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002251.1	PF00153.22	Mito_carr	13	98	7.50E-13
Glyur000048s00002251.1	PF00153.22	Mito_carr	104	186	2.00E-18
Glyur000048s00002251.1	PF00153.22	Mito_carr	200	227	6.80E-06
Glyur000048s00002251.2	PF00153.22	Mito_carr	17	74	3.60E-10
Glyur000048s00002251.2	PF00153.22	Mito_carr	88	115	3.10E-06
Glyur000048s00002251.3	PF00153.22	Mito_carr	13	98	1.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.604
SRR1783600	control	6.381
SRR1783602	moderate drought stress	5.678
SRR1811619	moderate drought stress	5.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.724
DRR006520	Root Summer glycyrrhizin high producing strain	8.091
DRR006521	Root Winter glycyrrhizin high producing strain	1.284
DRR006522	Root Winter glycyrrhizin high producing strain	0.963
DRR006523	Root Summer glycyrrhizin low producing strain	7.664
DRR006524	Root Summer glycyrrhizin low producing strain	8.032
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.515
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.388

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.637
SRR2868004	Drought Stress (root)	6.433
SRR2967015	Control (root)	4.730

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.043
SRR9715740	Leaf	17.288
SRR9715741	Leaf	11.136
SRR9715739	Root	3.178
SRR9715742	Root	3.439
SRR9715743	Root	2.524

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.742
SRR8749028	MeJA induced 9h	2.300
SRR8749029	MeJA induced 9h	2.200
SRR8749030	Uninduced	2.056
SRR8749031	Uninduced	0.545
SRR8749032	Uninduced	1.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.656
SRR8400027	Control - Root	12.652