Gene detail information of Glyur000048s00002250.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64790.1 | 3.00E-131 | O-Glycosyl hydrolases family 17 protein |
| NR | KHN38236.1 | 0 | Glucan endo-1,3-beta-glucosidase 8 [Glycine soja] |
| COG | YP_002296788.1 | 5.00E-07 | glycosyl transferase family protein [Rhodospirillum centenum SW] |
| Swissprot | tr|Q6NKW9|E138_ARATH | 2.00E-153 | Glucan endo-1,3-beta-glucosidase 8 (Precursor) |
| trEMBL | tr|I1K4S3|I1K4S3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G31860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 286477 | 288302 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17,CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002250.1 | PF00332.13 | Glyco_hydro_17 | 35 | 107 | 1.10E-12 |
| Glyur000048s00002250.1 | PF00332.13 | Glyco_hydro_17 | 119 | 330 | 7.40E-55 |
| Glyur000048s00002250.1 | PF07983.8 | X8 | 351 | 420 | 1.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.077 |
| SRR1811619 | moderate drought stress | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.077 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.076 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.062 |
| SRR2868004 | Drought Stress (root) | 0.066 |
| SRR2967015 | Control (root) | 0.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.191 |
| SRR9715740 | Leaf | 0.041 |
| SRR9715741 | Leaf | 0.047 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.270 |
| SRR8400027 | Control - Root | 0.376 |