Gene detail

Gene detail information of Glyur000048s00002248.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10490.1	0	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)
NR	XP_004504007.1	0	PREDICTED: UPF0202 protein At1g10490-like [Cicer arietinum]
COG	NP_578233.1	2.00E-74	DNA helicase [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|Q9XIK4\|U202A_ARATH	0	UPF0202 protein At1g10490
trEMBL	tr\|K7L6P0\|K7L6P0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G15130.2}

Sequence

Transcript Sequence

>Glyur000048s00002248.1
GTNACCGATGGGGGTTGTGGTGGATGAAGATGATGGTTGAAATTTTTAATTTAAAAAAGTATAGATCCTTAAAAATAAATATTCTTTTTGCACATAAGTCCATCGCTCACCTGAGAGATTCGCTAAGGTTGCTCACCCTAGCAGCACCGTCNTTAACCCCTCCATAAACCCTAATATAACACAAGTAACGAACCCGAACCTGTTCGTAATTTCTTAACGTCGTTTATTTCATTTCCTCAAAAATCCTCCACCTGCTGCTATCGACGCCGATTTAGTGAGTCCAGTGTGTTCCGCGCGAGAACGTAACTTATAAGAACTTCAATTTCGTGGCAGAAAAATGAGAAAGAAGGTGGACGAGCGAATCAGGACTCTNATTGAAAATGGCGTCAAAGCAAGGCATAGGTCCATGTTTGTCATCATCGGTGACAAGTCCCGTGACCAGATTGTAAATCTTCATTACATGCTTAGCAAGGCACAGATCAAATCCAGGCCAACTGTTTTATGGTGTTACAAGAACAAGCTTGAGCTAAGCAGTCATAAGATGAAACGAGCGAAGCAGATTAAAAAAATGATGCAGAGGGGTCTTTGGGATCCCGAGAAAGCCAATCCAATTTCATTGTTTCTGGAGAGTGGAGGAGTAACTCATTGTTTATATAAGGACTCTGAAAGAATTCTCGGTAATACCTTTGGGATGTGTATACTTCAGGATTTCGAGGCACTGACACCGAATCTCCTAGCAAGGACAATAGAGACAGTGGAGGGAGGAGGGTTGGTTGTTTTGCTTCTACGTTCTCTATCCTCACTGACCAGTTTGTACACCATGGTGATGGATGTCCATGATAGATTTCGAACTGAATCCCACTTTGAGGCTACTGGGCGCTTTAATGAACGCTTCCTACTATCACTTGCTTCTTGCAAGGCATGCGTGGTCATGGATGATGAGCTGAATGTGTTACCAATTTCATCTCATATAAGGTCTATTGCCCCAGTTCNTGTAACAGAGGACTCTGAGGGACTCTCAGAAGCAGAACAGGAACTGAAGAAACTTAAAGATGAACTAANTGAAGATTTCCCCGTTGGACCACTNATTAGGAAGTGTTGCACGTTGGACCAGGGAAAAGCTGTCATCACATTTTTGGATGCAATTTTGGACAAGACACTTCGTAGTACTGTTGCCTTGTTGGCTGCTCGTGGCCGTGGGAAATCAGCTGCTCTTGGTTTGTCAATTGCTGGAGCTATTGCTGTGGGGTATTCAAATATCTTTGTTACTGCACCCAGTCCTGAGAATTTGAAAACCTTGTTTGAATTTATATGCAAAGGTTTTGATGCACTTGACTACAAGGAACACATTGATTTTGACNTGGTGAAAAGTGTGAATCCTGAGTTCAAGAAAGCTATTGTAAGGATCAATATTTACAAGCACCACAGGCAGACAATTCAGTATATGCTACCTCACGAGCATGAAAAGCTTTCGCAAGTTGAATTGTTGGTTGTTGATGAAGCAGCTGCTATTCCGCTGCCGGTGGTGAAGTCTTTGCTTGGCCCATATCTGGTCTTCATGTCTTCTACTGTTAATGGTTATGAAGGTACTGGACGCTCTTTATCACTAAAACTTTTGCAGCAATTGGAAGAGCAAAGCCATGCNTCTGCTAAGAGCACAGAGGGCATGGGTTCTGGTCGTCTGTTTAAGAAAATTGAACTGAGTGAATCCATCAGATATGCTTCCGGGGATCCCATTGAAAGCTGGCTTAACAAATTACTTTGCTTAGATGTTTCAAATGCCATCCCTAATCTTAGCAGGTTACCCCCAGCCAGTGAGTGTGATCTATACTATGTTAATCGGGATACTCTCTTCTCCTATCACAGGGATAGTGAATTATTTTTGCAGCGAATGATGGCCTTGTATGTTGCATCACATTACAAGAATTCTCCAAATGATCTTCAATTGATGGCAGATGCTCCAGCACACCACTTATTTGTACTACTTGGACCTGTGGATGANTCAAAGAATCAACTTCCTGATATTTTGTGTGTCATCCAGGTTTGCCTTGAAGGGCAGATATCTCGTCAGTCAGCAATCCAAAGTTTGAGCAATGGTCATCAACCTTTTGGAGACNAAATACCATGGAAATTCTGTGAGCAATTCCGGGACACAGTTTTTCCTTCACTTTCAGGTGCTCGCATTGTACGCATTGCTACACACCCTAGTGCCATGAAGCTTGGATATGGTTCACAAGCAGTTGAGCTTTTAGCACGTTACTATGAAGGACAACTTAGTCTTATATCTGAGATTGATGTTGAAGATGAAGTGCAGGCTCCACGAATTAGAGTTACAGAAGCTGCAGAGAAGGTTTCACTACTTGAAGAAAATATAAAACCTAGAACAGATCTTCCTCATTTGCTAGTACATCTGCGTGAAAGGCGCCCAGAGAAGCTCCATTACATCGGTGTCTCCTTTGGGCTAACCTCAGACCTTTTTCGCTTTTGGAGGAGGCATAAATTTGCTCCTTTCTACATTGGCCAGATTCCAAATACTGTGACTGGTGAGCATTCTTGTATGATCCTGAAGCCCTTAAATAATGATGAGATTGAAGTTGATGAATCAAATCAGTGGGGCTTTTTTGGTCCATTTTACCAAGATTTTAAGCAAAGATTTACTAGACTCCTGGCATCNACTTTCCGTTGCATGGAATACAAGCTTGCTATGAGCATCATAGATCCAAAAATCAATTTTATGGATCAAGAGCATATGAAGACCGCTTCTGATAAAGTTCTGGGGCCAGTTAAAGAATATTTATCACCACATGATATGAAGCGACTAGAGGCTTATGTTGACAATCTTGCCGACTTTCACCTGATTTTAGATTTAGTTCCCACCCTTGCACATCTGTACTTCCAAGGAAAGCTTCCAGTTACAATATCACATGCTCAAGCTTGTGTGTTACTCTGCATTGGTCTGCAGAATCAGGACATTTCGTATATTGAGGGACAAATGAAGTTGGAAAGGCAACAAATATTGTCTCTATTTATAAAGGTTATGAAGAAGTTCTACAAANATCTACATGGCCATGCATCCAAGGAGATTGAATCAACCTTGCCACGACTGAAAGAAATTGTCATGGAACCTCATAGTATCTCCGTGGACGAAGACCTCAACAATGCGGCTAAACAAGTTGAGGATGATATGAAGTCAAAATCAGAAGCACTCTTTACTCCTGAATTGCTCGAGCAGTATGCCATCGAAGACGGAGAATCTGGCCTTGATAGTGTTTTACAAAATAGTGGTGGTAAAATACCCACNGGTGGTCTTATTAGTGTGAAATCCAGTAGAGTCAAGCCTGAAAAGGAGAAAGGAAGTCACAAGAGTGACAAAAAGCGGCGTACCGACAATCACAGCCATAAATCAAGCACAAAAAAGAAAAGATCTTGAATGGGAGAAAGAACCATCTAAGATAAAAACCGTGACGACGATTGCTGGGATTGTTGGTCCAGGATAGGAGTCGGAACAGCAGCACTATAGAGCAAAGTAAACGTCCAAATTGAAGAAAAGGGGAAAGAATGTCTGACAAGGTCAGATGACATCCCGGATTCTCGTCTTGGTCTTGATGGGTTGAGCGAAATTTTGTTTATTTATTCGAAGTACAGGATTTTGTATTGCTACNATACTTGATA

Protein Sequence

>Glyur000048s00002248.1
MRKKVDERIRTLIENGVKARHRSMFVIIGDKSRDQIVNLHYMLSKAQIKSRPTVLWCYKNKLELSSHKMKRAKQIKKMMQRGLWDPEKANPISLFLESGGVTHCLYKDSERILGNTFGMCILQDFEALTPNLLARTIETVEGGGLVVLLLRSLSSLTSLYTMVMDVHDRFRTESHFEATGRFNERFLLSLASCKACVVMDDELNVLPISSHIRSIAPVXVTEDSEGLSEAEQELKKLKDELXEDFPVGPLIRKCCTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLSIAGAIAVGYSNIFVTAPSPENLKTLFEFICKGFDALDYKEHIDFDXVKSVNPEFKKAIVRINIYKHHRQTIQYMLPHEHEKLSQVELLVVDEAAAIPLPVVKSLLGPYLVFMSSTVNGYEGTGRSLSLKLLQQLEEQSHASAKSTEGMGSGRLFKKIELSESIRYASGDPIESWLNKLLCLDVSNAIPNLSRLPPASECDLYYVNRDTLFSYHRDSELFLQRMMALYVASHYKNSPNDLQLMADAPAHHLFVLLGPVDXSKNQLPDILCVIQVCLEGQISRQSAIQSLSNGHQPFGDXIPWKFCEQFRDTVFPSLSGARIVRIATHPSAMKLGYGSQAVELLARYYEGQLSLISEIDVEDEVQAPRIRVTEAAEKVSLLEENIKPRTDLPHLLVHLRERRPEKLHYIGVSFGLTSDLFRFWRRHKFAPFYIGQIPNTVTGEHSCMILKPLNNDEIEVDESNQWGFFGPFYQDFKQRFTRLLASTFRCMEYKLAMSIIDPKINFMDQEHMKTASDKVLGPVKEYLSPHDMKRLEAYVDNLADFHLILDLVPTLAHLYFQGKLPVTISHAQACVLLCIGLQNQDISYIEGQMKLERQQILSLFIKVMKKFYKXLHGHASKEIESTLPRLKEIVMEPHSISVDEDLNNAAKQVEDDMKSKSEALFTPELLEQYAIEDGESGLDSVLQNSGGKIPTGGLISVKSSRVKPEKEKGSHKSDKKRRTDNHSHKSSTKKKRS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	273118	284695	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14521	NAT10, KRE33	EC:2.3.1.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

molecular_function
GO:0008080 N-acetyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002248.1	PF08351.6	DUF1726	106	200	1.40E-36
Glyur000048s00002248.1	PF05127.9	Helicase_RecD	281	478	1.30E-62
Glyur000048s00002248.1	PF13718.1	GNAT_acetyltr_2	518	747	5.30E-75
Glyur000048s00002248.1	PF13725.1	tRNA_bind_2	769	891	7.20E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.626
SRR1783600	control	16.696
SRR1783602	moderate drought stress	21.279
SRR1811619	moderate drought stress	21.041

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.381
DRR006520	Root Summer glycyrrhizin high producing strain	22.890
DRR006521	Root Winter glycyrrhizin high producing strain	13.263
DRR006522	Root Winter glycyrrhizin high producing strain	12.829
DRR006523	Root Summer glycyrrhizin low producing strain	18.506
DRR006524	Root Summer glycyrrhizin low producing strain	18.562
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.760
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.726

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.755
SRR2868004	Drought Stress (root)	18.992
SRR2967015	Control (root)	17.350

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.587
SRR9715740	Leaf	10.875
SRR9715741	Leaf	8.216
SRR9715739	Root	2.059
SRR9715742	Root	19.781
SRR9715743	Root	18.075

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.435
SRR8749028	MeJA induced 9h	19.899
SRR8749029	MeJA induced 9h	18.425
SRR8749030	Uninduced	3.612
SRR8749031	Uninduced	2.736
SRR8749032	Uninduced	3.214

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.314
SRR8400027	Control - Root	21.603