Gene detail information of Glyur000048s00002246 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21860.1 | 0 | violaxanthin de-epoxidase-related |
| NR | XP_004504008.1 | 0 | PREDICTED: uncharacterized protein LOC101512965 [Cicer arietinum] |
| Swissprot | tr|Q40593|VDE_TOBAC | 5.00E-11 | Violaxanthin de-epoxidase, chloroplastic (Precursor) |
| trEMBL | tr|G7LBB8|G7LBB8_MEDTR | 0 | Violaxanthin de-epoxidase-like protein {ECO:0000313|EMBL:AET04598.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 269663 | 272511 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.858 |
| SRR1783600 | control | 1.733 |
| SRR1783602 | moderate drought stress | 4.383 |
| SRR1811619 | moderate drought stress | 4.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.628 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.612 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.173 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.720 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.856 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.314 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.998 |
| SRR2868004 | Drought Stress (root) | 4.814 |
| SRR2967015 | Control (root) | 5.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.466 |
| SRR9715740 | Leaf | 18.702 |
| SRR9715741 | Leaf | 16.692 |
| SRR9715739 | Root | 0.561 |
| SRR9715742 | Root | 3.340 |
| SRR9715743 | Root | 2.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.667 |
| SRR8749028 | MeJA induced 9h | 3.990 |
| SRR8749029 | MeJA induced 9h | 4.963 |
| SRR8749030 | Uninduced | 2.301 |
| SRR8749031 | Uninduced | 1.904 |
| SRR8749032 | Uninduced | 1.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.854 |
| SRR8400027 | Control - Root | 10.628 |