Gene detail

Gene detail information of Glyur000048s00002245

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21870.1	2.00E-86	copper ion binding;cobalt ion binding;zinc ion binding
NR	XP_003525085.1	5.69E-153	PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Glycine max]
Swissprot	tr\|Q9SJ12\|ATP7_ARATH	1.00E-113	Probable ATP synthase 24 kDa subunit, mitochondrial (Precursor)
trEMBL	tr\|I1K4S0\|I1K4S0_SOYBN	2.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G31830.1}

Sequence

Transcript Sequence

>Glyur000048s00002245.1
CGCAGATTTTCGGATATGAGATGAAGCACGACGAGACATGATATCGAACGGCTGAGATATGAGGCGAAACCTATTCAACAGGAATAGGGTGTACGCAATCAGCACCAAACAAACAGAGGGAGAGAGTGAGTGAGAGAAGAAGGGTATCAAAATCAAAATCGGAGTGAAACGAGAGAAGCCCTAACGCGTTAGAGAGAAAGCTCAACACAAACACAACAGAACACTCATCAGCCACAGCCATGGCACTCTCTTCTCGTCTCTTTTCCAAATCCAAGCTGCTCTATGGTAGTCAACTACTTTTGCAAAGGGAGATTGCTGTTCCGGTTCGTCACTTTGCTAAGGAGTCTGCCCCTCCTTCCCTTAAGGGAGATGNGATGCTGAAGAACATTTTTGTGGAGGTGAAGAACAAATTTGAGACAGCCATTGGAATATTAAAGAAGGAGAAGATCACCATAGATCCAGAGGATCCAGCTGCTGTTTCTCATTATGCACAGGTCATAAAAACAGTCAGAGAGAAGGCAAACTTGTTGTCAGAGTCCCAAGATATCCTAAACACCATTGAAATGGAGACACAAGATATTCCAGATGCTCGAACTTATCTTTTGACCTTGAAGGAAATAAGAACCAAGAGAGGTCTTGTAGATGATCTTGGTGCAGAGGCCATGATGATGGACGCATTGGACAAAATTGAAAAGGAGTTAAAAAAACCTTTACTGAGAAATGATAAGAAAGGAATGGACCTTCTCTTGGCAGAGTTTGATAAGATTAACAAGAAACTTGGAATTCAAAAACAAGATCTACCAAAGTATGAAGAGCAGCTGGAACTTAAAATGGCCAAAGCGCAGCTGGAGGAGCTGAAAAAGGAATGTGTTGAGGCTATGGAAACTCAAAGGAAAAGGGAGGAATTCAAGGATGAGCCTGAATCGGTTGACGTCAAAACTCTGGACATCCGGAACTTCCTTTAAAAATGTCTTCAACATGTTTGCATGCATTAGAAATTTATTGCATTTGGATAAATGGCGAGGCCGTGTTTCTTCAATAAGTAGACACCAATGATTTNGAAGTGCAACACTGATGCCAGTTTGAAGATTCTTGAGTTTTCAAGGTCTTTTATATTCCAAATTCCTGATCAAAACTGGGAAGTTGAAAGTGATCAAATTTTCTAAATTTTTCTTTTATTCTGTCTGCGTTGTTTCCCGAGTATTTATTCATATTAATAATATGGCTGTTCCCAATTTTGATCGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	264950	268532	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	78.465
SRR1783600	control	78.894
SRR1783602	moderate drought stress	46.094
SRR1811619	moderate drought stress	45.914

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	120.232
DRR006520	Root Summer glycyrrhizin high producing strain	119.465
DRR006521	Root Winter glycyrrhizin high producing strain	61.401
DRR006522	Root Winter glycyrrhizin high producing strain	59.701
DRR006523	Root Summer glycyrrhizin low producing strain	96.412
DRR006524	Root Summer glycyrrhizin low producing strain	97.072
DRR006525	Leaf Summer glycyrrhizin high producing strain	78.047
DRR006526	Leaf Summer glycyrrhizin high producing strain	77.045

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	266.375
SRR2868004	Drought Stress (root)	213.239
SRR2967015	Control (root)	174.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	161.502
SRR9715740	Leaf	127.636
SRR9715741	Leaf	139.348
SRR9715739	Root	15.306
SRR9715742	Root	61.619
SRR9715743	Root	54.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	335.574
SRR8749028	MeJA induced 9h	237.985
SRR8749029	MeJA induced 9h	327.871
SRR8749030	Uninduced	152.783
SRR8749031	Uninduced	115.799
SRR8749032	Uninduced	153.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	189.038
SRR8400027	Control - Root	206.154