Gene detail information of Glyur000048s00002244 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10500.1 | 2.00E-62 | chloroplast-localized ISCA-like protein |
| NR | XP_007159767.1 | 2.70E-100 | hypothetical protein PHAVU_002G265600g [Phaseolus vulgaris] |
| COG | YP_007172738.1 | 4.00E-54 | Iron-sulfur cluster assembly accessory protein [Dactylococcopsis salina PCC 8305] |
| Swissprot | tr|Q9XIK3|ISCAP_ARATH | 3.00E-78 | Iron-sulfur assembly protein IscA, chloroplastic (Precursor) |
| trEMBL | tr|V7CS67|V7CS67_PHAVU | 1.00E-100 | Uncharacterized protein {ECO:0000313|EMBL:ESW31761.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 261248 | 264169 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002244.1 | PF01521.15 | Fe-S_biosyn | 68 | 169 | 1.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 66.951 |
| SRR1783600 | control | 66.932 |
| SRR1783602 | moderate drought stress | 60.900 |
| SRR1811619 | moderate drought stress | 60.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 67.091 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 67.223 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 145.537 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 142.513 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 91.929 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 92.005 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 241.563 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 240.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 72.903 |
| SRR2868004 | Drought Stress (root) | 100.562 |
| SRR2967015 | Control (root) | 89.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 209.077 |
| SRR9715740 | Leaf | 293.811 |
| SRR9715741 | Leaf | 248.468 |
| SRR9715739 | Root | 18.185 |
| SRR9715742 | Root | 23.404 |
| SRR9715743 | Root | 21.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.588 |
| SRR8749028 | MeJA induced 9h | 46.915 |
| SRR8749029 | MeJA induced 9h | 71.261 |
| SRR8749030 | Uninduced | 67.438 |
| SRR8749031 | Uninduced | 88.108 |
| SRR8749032 | Uninduced | 96.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.088 |
| SRR8400027 | Control - Root | 71.871 |