Gene detail

Gene detail information of Glyur000048s00002236

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G64840.1	general control non-repressible 5
NR	XP_003602495.1	ABC transporter F family member [Medicago truncatula]
COG	YP_007117938.1	ABC transporter related protein [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q9LV93\|AB5F_ARATH	ABC transporter F family member 5
trEMBL	tr\|G7JAB4\|G7JAB4_MEDTR	ABC transporter F family protein {ECO:0000313\|EMBL:AES72746.1}

Sequence

Transcript Sequence

>Glyur000048s00002236.1
ATGGAATTAGCCGCGAAGCTCCATCACCTAACCGCCACCGCCACCGGCACAATCATTCTCGACGCGCGCAAACCCGCTCTTCGCTCACTCTCCAACCGCCACCGATTCTTCTCCCCCAAAACACCNAACTTCGATGCCGCTACGTGTCGTTTATCCGCAGTTGACGCCGCCGAAACGACAACGATCCAAGACAAAAACGACAACGACATTGCGTCTCTGTTCTCCGACACCTCGACGGCCGAACACGACAGAAAACGCGGGAACAAGCAATCGAACTCCCACAATAACAAAACCGGTGCTTCGAGTGTCTCATCGGGTGTCAAGTTAGAGAACATAAGCAAAACCTACAAGGGTGTCACCGTTTTGAAGGATGTTAGCTGGGAAGTGAAGAAGGGTGAGAAAGTTGGTCTTGTTGGCGTCAACGGTGCTGGGAAAACGACCCAGATGAGAATCATCGCGGGTCTGGAAGACCCAGATTCGGGAAACGTGATAAAGGCCAAACCCNACATGAAAGTCGCGTTTTTGAGCCAGGAGTTCGAGGTGTCGCAGAGTAGGACGGTGAGGGAGGAGTTCCTGAGCGCTTTCAAGGAGGAAATGGAGGTATCTGGGAAGCTGGAGAGGGTCCAGAAGGCTCTGGAAGGTTCCGTGGACGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTCGATTTGCTTCAGAGGAAGGGTCAGGCATTGGAGTTGGATCAGGTGGATGCCAAAGTTGATAAGTTGATGCCTGAGCTTGGGTTTGCACCTGAGGATTCTGATAGGTTGGACCCAGATTTATTGCTGTTGGATGAGCCCACGAATCATCTTGACCTTGACACCATTGAGTGGCTTGAATATTATCTTAACGAGCAGGATGTGCCAATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAGCTGTGTACGAAAATCGTGGAAACTGACATGGGTGTATCAAGGACATTCGAGGGAAATTATTCTCAGTATGTAGTTTCAAAGGCAGCATGGGTTGAAGCACAGAATGCTGCATGGGAGAAGCAACAGAAAGAAATTGAACAGACAAAAGGCTTAATTAATAGGCTAGGTGCTGGAGCAAATTCTGGTCGTGCTTCATCTGCTGAGAAGAATTTGCTTCTATCTTTACGAGAACAGAAGCTAGAGAGACTTCAGGAAGAGGAACTGGTAGAGAAGCCGTTTCAACGGAAACAAATGAGAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTAACAATTAAGAACTTAGAATATGGCTTTGAGGATACGGTACTTTTCAAAAAGGCAAATCTGACAATTGAAAGAGGAGAAAAAATTGCCATTGTTGGTCCAAATGGATGTGGTAAGAGTACTTTACTGAAATTGATAATGGGTTTAGAGAAGCCAATCGGGGGTGAAGTTATGCTTGGGGAGCACAATGTATTACCAAACTATTTTGAGCAAAATCAGGCAGAGGCACTTGATCTGGACAAGACAGTGCTTCAGACAGTAGAAGAAGTTGCAGAGGATTGGAGGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTCAAAGCTGATATGCTTGACAGGAAAGTTTCGCTATTGAGTGGTGGCGAGAAGGCACGCTTGGCGTTTTGTAAATTTATGGTAAAACCATCAACTCTACTTGTGTTGGATGAACCAACCAATCACTTGGATATTCCTTCTAAGGAAATGCTTGAGGAGGCAATAACAGAATACCAGGGCACTGTTATCACAGTGTCTCACGATCGATACTTTATAAAGCAGATAGTTAATAGGGTGATAGAAATCAAAGATGGAACTGTACAGAATTATGCAGGTGATTACAATTATTATTTAGAGAAAAATCTTGATGCTAGGAGTAGAGAGCTTGAACGTGAGGCGGATCTAGAGGAGAAAGCTCCAAAAGTGAAAGCCAAATCTAAGATGTCCAAGGCCGAGAAAGAAGCACGCAAGAAACAAAAGATGCAGGCTTTTCAGGCTGCAAAGCAAAAGTCTAAAAGTTCAAAAAATGCAAAGAGATGGAATTGAGTAATCCATTCCACAACATCAGAGGTTCTCCAATTCCATCAATATCATTAGACTAATTTTACTTTACCATGCAAAGAGGGATAGACAGATAGACAGTGAAGTAGCATATTGAGTGAGGCTACTCAGTATTGTGTATATATCAATTATCAATAAATTAACTATATGGATTATTTGACTGGAATGTAACAGCTTAATTACATCAATTGTGATTTCTGCAAAAGGTTAGAGTCCCAACTGCAATTTGAATAATAAAAAAACTACACTACCTTCAAATCCTGAAAGGTGGTACTTTACTGGCGCCAATGAACTAATTTCAATCAATCACCAAAGGTACATTAAATTAAAACAGAAAAATGTAGGAAAAAGTACAGAAGACAAAAAGTTTACCATAAATAAATTGTTTCATACAGAGATAGAGATTGTCATCTCCTCCACCAACAGCATTACAATTTTGATTAAAATCACCCTAAAGAAAATATTCTGATCAAAGTTCAGCTTTAGACTCCTTGTCAGAGTCGGCACCCTCTTTCACATTTTCTGTTGTCTTATGAATTGCTTCCCCGACCACTTTAGCGGCTGATTTGGCAGTTTCCTCAACCGATTCTTTGCTTTCGTGGAGGCTNTTCCCAACCGCTTCTTTCACACCATCAGGTTCTGCCTCTCCCGAACCCCTGAAACTGATAAAAGGATATTACATAACATTATAACGAGTGCTAGCAATACATTCTATGATTTGGTGAAATTCACGTGGGTTCCATTAATCATATGCGTCTTATATTCTATTTGGTGGGATTCATTTACAAAGTAGTGAAATCTACATGAATTAAAGAATACCCACAATACATCGTTGTTCATATTGAAATATAAATAAATAAATAAATAAATAAAAATTGATCAAATGGGGATTCTGTGAACCTTTTTAACTTACTCCAAATTTGGTGGGGAGAACTGCATCTGGAGATCATGTATGACAGTTTTGAATTTCTCCCAGGAGCTTTTGTGGGACTTTCTGAGTAGAGAAACGGTATCCATCAGTATCTTGGAAAAGAGTGGTTTTTCGGGGTGGTCTTGGGCAACATTTTGGCCACCTTCATCAAGGGTTGCAAGCTGGAATTGGAGAACGATCAAGACACAGAAAAGAAGGAACAATAGGGTGTTAGCTGTTCTGCTGAATCTATCCATATCCTAATAATAATTAATTACGAACAAATTAAACTCTTCCAAGGTTAGAGAAGAAAGAGGGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	226310	232159	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002236.1	PF00005.22	ABC_tran	122	210	7.30E-14
Glyur000048s00002236.1	PF12848.2	ABC_tran_2	316	412	1.40E-14
Glyur000048s00002236.1	PF00005.22	ABC_tran	439	570	2.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.947
SRR1783600	control	6.456
SRR1783602	moderate drought stress	6.019
SRR1811619	moderate drought stress	5.876

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.591
DRR006520	Root Summer glycyrrhizin high producing strain	7.281
DRR006521	Root Winter glycyrrhizin high producing strain	7.894
DRR006522	Root Winter glycyrrhizin high producing strain	8.558
DRR006523	Root Summer glycyrrhizin low producing strain	8.030
DRR006524	Root Summer glycyrrhizin low producing strain	8.493
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.711
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.533

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.829
SRR2868004	Drought Stress (root)	19.870
SRR2967015	Control (root)	13.426

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.821
SRR9715740	Leaf	24.691
SRR9715741	Leaf	31.081
SRR9715739	Root	3.083
SRR9715742	Root	6.784
SRR9715743	Root	6.520

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.793
SRR8749028	MeJA induced 9h	30.054
SRR8749029	MeJA induced 9h	39.290
SRR8749030	Uninduced	21.765
SRR8749031	Uninduced	16.703
SRR8749032	Uninduced	22.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.395
SRR8400027	Control - Root	13.997