Gene detail

Gene detail information of Glyur000048s00002220.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14540.1	1.00E-51	nuclear factor Y, subunit B3
NR	XP_003532849.1	7.33E-119	PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
Swissprot	tr\|O23310\|NFYB3_ARATH	9.00E-64	Nuclear transcription factor Y subunit B-3
trEMBL	tr\|K7L6M6\|K7L6M6_SOYBN	3.00E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G14931.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	156164	156889	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0005622 intracellular

GO:0005634 nucleus

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002220.1	PF00808.18	CBFD_NFYB_HMF	34	98	1.50E-27

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	4.599
SRR1783600	control	4.707
SRR1783602	moderate drought stress	14.305
SRR1811619	moderate drought stress	13.883

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.700
DRR006520	Root Summer glycyrrhizin high producing strain	13.352
DRR006521	Root Winter glycyrrhizin high producing strain	0.668
DRR006522	Root Winter glycyrrhizin high producing strain	0.600
DRR006523	Root Summer glycyrrhizin low producing strain	4.939
DRR006524	Root Summer glycyrrhizin low producing strain	4.322
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.653
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.524

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.797
SRR2868004	Drought Stress (root)	2.146
SRR2967015	Control (root)	2.506

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.521
SRR9715740	Leaf	0.560
SRR9715741	Leaf	0.275
SRR9715739	Root	1.750
SRR9715742	Root	3.594
SRR9715743	Root	2.425

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.002
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.029
SRR8749030	Uninduced	0.088
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.018

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.668
SRR8400027	Control - Root	8.066