Gene detail

Gene detail information of Glyur000048s00002218

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64940.2	0	ABC2 homolog 13
NR	KHN29105.1	0	Hypothetical protein glysoja_008440 [Glycine soja]
COG	YP_007130767.1	2.00E-172	ABC-1 domain-containing protein [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q9MA15\|Y1796_ARATH	1.00E-68	Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic (Precursor)
trEMBL	tr\|I1KT88\|I1KT88_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G14920.1}

Sequence

Transcript Sequence

>Glyur000048s00002218.1
ATGGCTTCGTCTTCTCTACTCTTACCCGAACTCAAATTCCTTGCTCCGCAAATTACCCCCAAACGTCGTCGTTCTGTCTCTAGATTGTGTTCATGCTGTTCCGTTTATAGGAACTCGAGGTACAACTACAATTACAATGTTGCTGCTCTTCGCATGCGAATCCGCGCCGTCAAGGAGGAAGGTGCATTGACNGAGGAGTTGGTTGAGAGAGCTAGCGATGTGAAATGGAGTGGAAACGGAGCTGCCGTTGGAAACGGCAGCAATGGGTCCGTTAGAGGTTACGTGAATGGTAGTTTGGGCGTTAGTGAGAGTGGAAATGGAAGCTTAGTGAAGTATATGGATGGCAATGGTGTGGCGGCGGAGGTGGCGGTTGCGCCTGGAGGTCGTTGGAGCAGATTCAAGACTTACTCGACGATCCAGAGAACGTTGGAAATTTGGGGATTTGTTATAACATTTATCTTCAAGGCTTGGCTCAGTAATCAGAAGTTCTCTTACAAAGGAGGAATGACTGAGGAAAAGAAAACCTTAAGGCGAAAGACCCTTGCCAAGTGGCTGAAGGAAAGCATTCTGAGATTAGGTCCTACGTTTATCAAAATTGGCCAGCAATTCTCCACAAGAGTTGACATTCTTCCTCAAGAATATGTTGACCAGTTATCAGAACTTCAGGATCAAGTTCCTCCATTTCCTTCAGAGACTGCTATAGCNATTGTTCAAGAAGAGCTTGGGGCTCCTGTAGCTGGCATCTTTGATCAGTTTGACTATGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTTCATCGTGCGAGATTAAGGGGGCAGGAGGTTGTTGTTAAGGTGCAAAGGCCTGGTCTCAAGGATCTTTTTGATATTGATCTTAAAAACCTGAGGGTTATTGCTGAATATCTTCAAAAAATTGATCCTAAATCAGATGGTGCAAAGAGGGATTGGGTTGCTATATATGATGAGTGTGCCTCTGTTTTATATCAGGAGATTGATTACACCAAGGAAGCTGCTAATGCAGAACTATTTGCAAGTAACTTTAAGAACATGGATTATGTGAAAGTTCCTACAATTTACTGGGATTATACCACACCACAGATTCTGACAATGGAGTATGTTCCAGGGATTAAAATAAACAAAATACAAGCTTTAGATCAGCTGGGTGTTGACCGGAAAAGGTTAGGGCGATATGCTGTTGAATCTTACTTGGAGCAGATTCTATCACATGGTTTCTTCCATGCTGATCCTCATCCTGGAAATATTGCTGTCGATGATGTCAATGGTGGAAGATTAATCTTCTATGATTTTGGAATGATGGGAAGTATCAGTCCAAATATCCGAGAAGGTTTACTCGAAGCTTTTTATGGAATTTATGAGAAGAGTCCAGATAAGGTTCTTCAAGCAATGATTCAGATGGGCGTTCTTGTCCCAACTGGTGATATGACTGCTGTTAGACGAACAGCACAGTTCTTCCTCAGAAGTTTTGAAGAGCGTCTGGCTGCACAAAGGAGAGAGAGAGAGATGGCAACAGCTGAACTTGGATTCAAAAAGCCATTAAGCAAGGAGGAAAGAGTAATGAAGAAGAAAGAACGTCTGGCTGCTATTGGGGAAGATTTATTATCCATTGCAGCAGACCAGCCCTTCCGGTTTCCTGCTACATTCACATTTGTTGTTAGAGCCTTCTCGGGTCAACTTGTTTCTGCAGTTTTGGATGGCATTGGAAAGGGTCTTGATCCCCGTTTTGATATTACTGAGATTGCGAGACCTTATGCTCTGGAGTTGCTGAAATTCCGTGAGGCAGGAGTTGAAGTTATCCTAAAGGCAGACTTCAGAAAGAGATGGGACAGACAATCTCAAGCATTTTACAACCTATTTAGACAGTCTGATAGGGTCGAAAAGCTGGCTGACATTATCCAAAGATTGGAGCAAGGTGATCTAAAGCTCCGAGTCCGAACTTTGGAATCTGAGAGGGCATTCCAACGTGTTGCCACTGTGCAGAAGACAATAGGGAATGCAGTAGCTGCTGGGAGCCTAATAAATCTTGCAACAGTTCTGTATCTCAATTCAATTAGGGTGCCTGCCACTATAGCATATTTCTTTTGTGCAATATTTGGTTTTCAAGTTCTAATTGGCATTGTGAAGATCAAGAAGTTTGATGAACGGGAACGGTTGATTACAGGGACTGCATAAGCAACTACTAGCCTATTGCAGATATAGGATGGACATGTAGCTCATGCTAAGGTCATGGTTACAAGTCAACCTTCGGAGCATCACTTAGGAGCTCAAAGTAGTAGCCAAACATCTTGAAAGATATCAGTATGTGAAAAAACTTTCAACTGGCAGGCATATTGGAGGCTTATTCTGTTCAATTGATTACTCTGCTTAAAGGATCGGGCCCTGAGGTAGCCAATTGGCTAGCCACATTTTTGTCATTAACATGAACCCATCGAACCCCCCGATCCCCTCTCCTTCCATAACTATATCCTCAAAAAACNATTTATTAGTGTTTTTTTGCCACTTCATATCGGTTTTAGTAAATTTTATAGGAGTTAGTATATAGGGTTTATTGTTGTGGATACCATATAGTATGGTGCAGCTTCCTATAAATTTGACATCGGGAAGCTTTGCTTGTAACTGACTTACATAAATTTGTTCAATNAAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	140724	150767	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002218.1	PF03109.11	ABC1	239	359	9.80E-38
Glyur000048s00002218.2	PF03109.11	ABC1	239	359	1.00E-37
Glyur000048s00002218.3	PF03109.11	ABC1	239	359	1.00E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.883
SRR1783600	control	3.932
SRR1783602	moderate drought stress	4.458
SRR1811619	moderate drought stress	4.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.554
DRR006520	Root Summer glycyrrhizin high producing strain	2.601
DRR006521	Root Winter glycyrrhizin high producing strain	5.510
DRR006522	Root Winter glycyrrhizin high producing strain	5.512
DRR006523	Root Summer glycyrrhizin low producing strain	3.201
DRR006524	Root Summer glycyrrhizin low producing strain	3.175
DRR006525	Leaf Summer glycyrrhizin high producing strain	110.013
DRR006526	Leaf Summer glycyrrhizin high producing strain	109.353

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.336
SRR2868004	Drought Stress (root)	26.800
SRR2967015	Control (root)	16.108

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	123.540
SRR9715740	Leaf	137.757
SRR9715741	Leaf	131.244
SRR9715739	Root	2.399
SRR9715742	Root	8.613
SRR9715743	Root	7.900

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.149
SRR8749028	MeJA induced 9h	34.329
SRR8749029	MeJA induced 9h	26.652
SRR8749030	Uninduced	7.603
SRR8749031	Uninduced	5.391
SRR8749032	Uninduced	7.879

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.740
SRR8400027	Control - Root	17.999