Gene detail information of Glyur000048s00002206 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10060.1 | 2.00E-106 | ENTH/VHS family protein |
| NR | KHN38205.1 | 0 | Regulation of nuclear pre-mRNA domain-containing protein 1B [Glycine soja] |
| trEMBL | tr|K7L6K9|K7L6K9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G14790.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 89929 | 95180 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002206.1 | PF04818.8 | CTD_bind | 57 | 118 | 1.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.549 |
| SRR1783600 | control | 8.404 |
| SRR1783602 | moderate drought stress | 12.661 |
| SRR1811619 | moderate drought stress | 12.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.675 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.613 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.908 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.750 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.740 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.686 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.602 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.163 |
| SRR2868004 | Drought Stress (root) | 14.446 |
| SRR2967015 | Control (root) | 15.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.836 |
| SRR9715740 | Leaf | 20.382 |
| SRR9715741 | Leaf | 12.788 |
| SRR9715739 | Root | 1.277 |
| SRR9715742 | Root | 3.836 |
| SRR9715743 | Root | 4.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 67.093 |
| SRR8749028 | MeJA induced 9h | 54.261 |
| SRR8749029 | MeJA induced 9h | 93.857 |
| SRR8749030 | Uninduced | 15.630 |
| SRR8749031 | Uninduced | 21.524 |
| SRR8749032 | Uninduced | 26.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.638 |
| SRR8400027 | Control - Root | 15.511 |