Gene detail information of Glyur000048s00002204 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10070.1 | 7.00E-89 | RNase L inhibitor protein-related |
| NR | XP_003531368.1 | 3.81E-150 | PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Glycine max] |
| COG | YP_004383699.1 | 5.00E-40 | hypothetical protein MCON_1157 [Methanosaeta concilii GP6] |
| trEMBL | tr|I1KT68|I1KT68_SOYBN | 1.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G14780.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 78650 | 82616 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002204.1 | PF04068.10 | RLI | 35 | 65 | 2.40E-12 |
| Glyur000048s00002204.1 | PF04034.8 | DUF367 | 76 | 202 | 2.10E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.321 |
| SRR1783600 | control | 8.288 |
| SRR1783602 | moderate drought stress | 10.253 |
| SRR1811619 | moderate drought stress | 9.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.014 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.519 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.404 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.048 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.896 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.043 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.099 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.539 |
| SRR2868004 | Drought Stress (root) | 30.106 |
| SRR2967015 | Control (root) | 25.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.109 |
| SRR9715740 | Leaf | 31.940 |
| SRR9715741 | Leaf | 30.438 |
| SRR9715739 | Root | 13.726 |
| SRR9715742 | Root | 23.061 |
| SRR9715743 | Root | 18.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.973 |
| SRR8749028 | MeJA induced 9h | 11.931 |
| SRR8749029 | MeJA induced 9h | 12.691 |
| SRR8749030 | Uninduced | 11.249 |
| SRR8749031 | Uninduced | 8.037 |
| SRR8749032 | Uninduced | 8.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.981 |
| SRR8400027 | Control - Root | 32.247 |