Gene detail

Gene detail information of Glyur000048s00002201

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22125.1	0	binding
NR	XP_004504121.1	0	PREDICTED: uncharacterized protein LOC101494820 [Cicer arietinum]
Swissprot	tr\|Q5VRH9\|PUB12_ORYSJ	3.00E-10	U-box domain-containing protein 12
trEMBL	tr\|I1KT65\|I1KT65_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G14760.1}

Sequence

Transcript Sequence

>Glyur000048s00002201.1
ATGTCTGCTATCTTTGTGTGTGTTGAGCAGGAGGAGGCTCTGAACACTGTCTCTTCAGTATCTGAAGAGGGGTCTCATCTATTTGGACTGAAGAAGGGTCTTTCTTCAAGTGAAGAAGAAGCCATCAAGCTGGCGACCACACTGACTTGGAGGCATGCTGCCAACAATGGCAGCGGCCATGCTCCCAATGATCTGGAAAGAAATGGTGACGGGAAGGCTCAAGATTCAGAGCCCCCAACTCCCCATTCTGTTTTGAAGATGGGATTGAGAGAACGTAATAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGCCAGAGCTCATCTTCTGTACAAGAGAAAGAGTATTCCTTAAGGCAGTTATTGGATCTTATAGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCGGGTTCGTTGAATGTAAAGATACAGGCAGCAACTGTCTTGGGCTCCCTGTGTAAAGAAAATGAACTGAGGGTGAAAGTCTTGCTTGGAGGATGTATTCCTCCATTGCTTGGCCTACTGAAGTCCAGTTCAACTGAAGGTCAAATTGCTGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGTGTAAAAGATCATGTGGGTTCAAAAATCTTTTCAACTGAAGGAGTGGTGCCAGTGCTCTGGAAGCAACTGCAAACTGGCTTGAAGGCAGGAAATGTAGTTGAAAGTTTATTGATGGGAACATTGAAAAATCTCTCCAGCAATACTGAGGGATTCTGGAATGCAACAATACGAGCCGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCACTTTAGCTAATGTTTGCTTTTTACTTGCTTCTGTAATGATGGAAGATGCATCTGTCTGTTCGAAAGTGATGACAGCAGAGGTGACAAAACAACTCCTGAAACTATTGGGCCCCGGTAATGATGACCCCATTAGAGCTGAAGCAGCCAGTGCTCTTAAATCTCTGTCTGCCCAGTGCAAAGAGGCAAGGCGAGAGATAGCCAATTCTAATGGTATTCCTACTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTGCAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGCCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTAGCTTCAGCTCTTATGATATATGATAACAAGGCAGAGTCCACCAGGCCATCAGATCCTTTGGTAGTTGAGCAGACATTACTCAAACAATTTAAACCTCACCTGCCCTTCCTTGTGCAAGAACGGACCATTGAAGCTCTAGCTAGTTTGTATGGCAATCCCATACTGTCAAATAAACTTGCAAATTCTGAAGCAAAACATTTGCTTGTTGGTTTGATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTGTAAAATCTCTCTTGACACTATGCAAAAGTGAAGGCAGTCTATGGCATGCACTTCAGGGTCGTGAAGGAGTTCAACTATTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCCTGCTTTGCCTTCTATCTAATGAAAGTGATGAAAGTAAATGGGCAGTTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCAAGAATCCTTAAAAACCTTTGCAATCACAGTGAAGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGTCCAAATGGGAAGGATATTGCAGCAAAGACCTTAAATCATTTAATTCATAAATCTGATACTACAACTATCAGTCAGCTTACAGCATTGTTAACCAGTGATATTCCTGATTCTAAGGTATATGTTTTGGATGCTTTGAGAAGTATGCTTTCAGTTGCTCCTCTTAGTGACATTTTACGTGAAGGCAGTGCTGCCAGTGATGCAGTTGATACCATGATAATGTTATTGAGCTCTACCAATGAAGAAATTCAGGCAAAGTCTGCATCAGCTCTGGCTGGAATTTTCGAAGCAAGGAAAGATGTGCGTGAAAGTAGCATTGCTGCCAAAACTCTGGTGTCAGCCATGAAATTGCTTAATGTTGAATATGAAAGTATCCTAATGGAGTCCTCACACTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCAGTTGTTGCTAGAGATGCATTATCCCCCCTAGTTGCACTAGCTAACTCTTCGGCTTTGGAAGTTGCAGAGATGGCAACATGCGCTGTAGCAAATCTCATTTTGGATGGTGAAATTGCAGAGAAAGCTGTTGCAGAAGAAGTTATCTTGCCTGCTACCAGAGTATTAAATGAAGGCACAATTTCTGGGAAAACCCATGCTGCAGCAGCAATTGCTCGCCTTTTACATTCTCGGAAAGTTGATCATGCTGTTACCGATTGTGTGAATCGTGCTGACACTGTTCTTGCATTAGTTTCTTTTTTAGATTCTTCTGTCAATGGGTCTGTTGACACAACAGAGGCTCTAGAAGCACTTGCTATTCTGTCCCGATCACAAGAGACCAGTGCACATATTAAACCAGCATGTGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCCTCTGCATTGTTGATTCCACGCCGACGTTACAAGATAAAACAATTGAGATTTTGTCTCGATTATGTAAGGATCAACCTGTTGTTTTAGGAGATACTATTGCTTCTGTCTCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCACAAATATAAAGGTCAAAATTGGGGGGGCTGCACTTCTTATTTGTGCTGCAAAAGCAAATCACCTGAGATTGGTGGAGGATCTCAATTTATCGAACTTGTCTGATAACCTTATTCAGTCTCTAGTTGATATTCTCATTTCTGCACAGTCTTCTTTGGATAGTCAGGGTGATGACGACAACGAATTCATCAGCATATGCAGGCATATAAAAGAAGAGGCCAGCAGCTGTGGATCCAACACTGGCACTTCCATTATATGTGGTGCTGACTTAGCTATATGGTTACTGTCTATTCTTGCTTGTCATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCACTGACAGGATATCAAATTATTCCTCACAGTATTCTCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTTGTGCCTTATTATTGGCAATATTATTTCAAGATAGAGATATCATCCGGGCACATGCAACCATTAAATCTGTACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCGGCAAACAAATATTTTTCTGCACAAGCAATTGCTAGCCTTGTCTGCAATGGTAGCCGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGACATACAGGATCTTCTGGAATTGTCAGAGGAATTTTCATTGGTGCGTTATCCTGATCAGGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATCCCGGATCGCCCAGGGGCACCATTTTTAGCTCTTGGGATTTTGACTCAGCTTGGTAAAGATTGCCCATCAAATAAGATTGTAATGGTAGAATCTGGAGCCTTAGAGGCTCTTACGAAGTATCTTTCCCTTGGTCTGCAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTAGCAGTGCTGAGATAAGAAGACACGAGTCAGCATTTGGTGCTGTTTCTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTATTTTCTGCTGACCACATTAGAAATGCAGAGATTTCTCGGCAAGCTGTTCAGCCCTTGGTAGAAATTCTTAATACTGGTTCAGAAAGGGAGCAGCATGCCGCAATTGCTGCATTGGTTGGGTTACTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCCGTGGATGTTCTTTATAAGATCCTTTCGTCAAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACGATGGCTGCTGCACGCTGTGTTGAACCACTCGTCTCTCTCCTTGCAACTGAGTTTAGCCCTGCTCAACATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTAATCTACTGTCTGGTAGGAACTATGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCTTGCAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCTTACATGAGGCACCTGATTATTTGTGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACCATCGACTGCTAAAGTTGTTGAACCCTTGTTTTGGTTGCTGACAAGTCACGAATTCGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGACCATTCATTGACTTCTCGCCAAGTTATTGAACCACTTCTCCCTTTGCTTGATTCTCCTATATCACCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTCTGGAAGAACACCTTCAGAAGGATCCAGTGGCACAGCAAGTAATTGGCCCTCTTATACGAATTCTTGGTTCAGGTATACATATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTATTGCACTAACATGGCCAAATGAAATTGCCAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCCGATCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGTCAAGTATTCTGCAATTTAGCTCAGAATTCTACTTGGAAGTGCCTATTGCTGTGTTGGTAAGGTTGCTTCGATCCGGCTCAGAGGGCACAGTTATTGGTGCATTAAATGCTCTTCTGGTATTGGAGAGTGATGATGGAACCAGTGCAGAAGCTATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTATTAGAAGTATTGCTGAACAATGTAAAGATCCGAGAAACGAAAGTTACTAAATCAGCTATCTCACCATTATCCCAGTATCTCTTGGACCCACAAACACAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTGTTCCAGAATGAGGCTCTTGCCCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCGACAGAAGAAATGAAGGTTGTAGCCATATGTGCTTTGCAAAACCTTGTGATGTACAGTCGATCAAATAGAAGAGCTGTTGCGGAGGCCGGTGGTGTTCAGGTTGTATTGGATCTGATAGGTTCAAGTGAGCCTGAAACTTCTGTTCAGGCTGCAATGTTTATTAAACTTCTGTTCTCAAATAATACCATTCAAGAGTATGCTTCTAGCGAAACAGTCAGAGCAATCACTGCCACTATTGAAAAAGATTTATGGGCGACTGGAACTGTGAATGAGGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCACCTGGTTACATCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCCGCTTTGGATGCGCTTTTTCTGCTCAGACAAGCTTGGTCAGCATGCCCTGCCGAAGTTTCAAGATCTCAGTCAATCGCGGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCTCCTCGGTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCGGGGACATTGGTGGTGATCATCAAGCGCGGTAACAATATGAGGCAGTCTGTTGGAAACCCAAGTGTTTATTGCAAACTTACACTCGGCAACACTCCGCCTAGGCTAACCAAGGTGGTGTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAGATTGATAGAGTGGTAATGCTTGGAGCAGTAGCTGGCGAGTACACTCTTTTGCCTGCAAGTAAAAGTGGCCCACCAAGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAAACAAGTGATGCAGTTGCAGTTTAG

Protein Sequence

>Glyur000048s00002201.1
MSAIFVCVEQEEALNTVSSVSEEGSHLFGLKKGLSSSEEEAIKLATTLTWRHAANNGSGHAPNDLERNGDGKAQDSEPPTPHSVLKMGLRERNSSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWKQLQTGLKAGNVVESLLMGTLKNLSSNTEGFWNATIRAGGVDILVKLLATGQPSTLANVCFLLASVMMEDASVCSKVMTAEVTKQLLKLLGPGNDDPIRAEAASALKSLSAQCKEARREIANSNGIPTLINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRPSDPLVVEQTLLKQFKPHLPFLVQERTIEALASLYGNPILSNKLANSEAKHLLVGLITMAANEVQDELVKSLLTLCKSEGSLWHALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNESDESKWAVTAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDIPDSKVYVLDALRSMLSVAPLSDILREGSAASDAVDTMIMLLSSTNEEIQAKSASALAGIFEARKDVRESSIAAKTLVSAMKLLNVEYESILMESSHCLAAIFLSIKENRDVAVVARDALSPLVALANSSALEVAEMATCAVANLILDGEIAEKAVAEEVILPATRVLNEGTISGKTHAAAAIARLLHSRKVDHAVTDCVNRADTVLALVSFLDSSVNGSVDTTEALEALAILSRSQETSAHIKPACAVLAEFPKSISPIVLCIVDSTPTLQDKTIEILSRLCKDQPVVLGDTIASVSGCISSIAKRIISSTNIKVKIGGAALLICAAKANHLRLVEDLNLSNLSDNLIQSLVDILISAQSSLDSQGDDDNEFISICRHIKEEASSCGSNTGTSIICGADLAIWLLSILACHDEKNKIAIMEAGAIDVLTDRISNYSSQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATIKSVPALANLLKSEESANKYFSAQAIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTQLGKDCPSNKIVMVESGALEALTKYLSLGLQDATEEAATDLLGILFSSAEIRRHESAFGAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAEISRQAVQPLVEILNTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVDVLYKILSSNCSMDLKGDAAELCCALFGNTRIRSTMAAARCVEPLVSLLATEFSPAQHSVVRALDRLVDDEQLAELVAAHGAVVPLVNLLSGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNATIAKGPSTAKVVEPLFWLLTSHEFGPDGQHSALQVLVNILEHPQCRADHSLTSRQVIEPLLPLLDSPISPVQQLAAELLSHLLLEEHLQKDPVAQQVIGPLIRILGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSEGTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAISPLSQYLLDPQTQAQQARLLATLALGDLFQNEALARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSEPETSVQAAMFIKLLFSNNTIQEYASSETVRAITATIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRSQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMRQSVGNPSVYCKLTLGNTPPRLTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKTSDAVAV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	56249	66481	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002201.1	PF00514.18	Arm	147	178	4.10E-05
Glyur000048s00002201.1	PF00168.25	C2	2075	2153	3.00E-10
Glyur000048s00002201.2	PF00514.18	Arm	137	168	4.10E-05
Glyur000048s00002201.2	PF00168.25	C2	2065	2143	3.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.867
SRR1783600	control	33.895
SRR1783602	moderate drought stress	21.111
SRR1811619	moderate drought stress	21.050

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.570
DRR006520	Root Summer glycyrrhizin high producing strain	14.516
DRR006521	Root Winter glycyrrhizin high producing strain	3.300
DRR006522	Root Winter glycyrrhizin high producing strain	3.178
DRR006523	Root Summer glycyrrhizin low producing strain	10.794
DRR006524	Root Summer glycyrrhizin low producing strain	10.732
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.519
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.391

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.763
SRR2868004	Drought Stress (root)	27.151
SRR2967015	Control (root)	30.676

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.492
SRR9715740	Leaf	8.019
SRR9715741	Leaf	8.330
SRR9715739	Root	5.107
SRR9715742	Root	22.242
SRR9715743	Root	19.289

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.655
SRR8749028	MeJA induced 9h	10.798
SRR8749029	MeJA induced 9h	7.936
SRR8749030	Uninduced	1.735
SRR8749031	Uninduced	0.674
SRR8749032	Uninduced	1.507

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.117
SRR8400027	Control - Root	33.743