Gene detail information of Glyur000048s00002197 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39700.1 | 3.00E-56 | Heavy metal transport/detoxification superfamily protein |
| NR | AFK40125.1 | 4.67E-89 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9SZN7|HIP26_ARATH | 5.00E-49 | Heavy metal-associated isoprenylated plant protein 26 (Precursor) |
| trEMBL | tr|I3SIN3|I3SIN3_LOTJA | 2.00E-89 | Uncharacterized protein {ECO:0000313|EMBL:AFK40125.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 44263 | 44825 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002197.1 | PF00403.21 | HMA | 35 | 90 | 1.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.811 |
| SRR1783600 | control | 3.691 |
| SRR1783602 | moderate drought stress | 5.020 |
| SRR1811619 | moderate drought stress | 5.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.098 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.773 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.619 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.466 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.282 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.922 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.561 |
| SRR2868004 | Drought Stress (root) | 36.546 |
| SRR2967015 | Control (root) | 41.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.815 |
| SRR9715740 | Leaf | 1.728 |
| SRR9715741 | Leaf | 4.454 |
| SRR9715739 | Root | 3.663 |
| SRR9715742 | Root | 1.860 |
| SRR9715743 | Root | 2.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.519 |
| SRR8749028 | MeJA induced 9h | 3.211 |
| SRR8749029 | MeJA induced 9h | 10.976 |
| SRR8749030 | Uninduced | 3.858 |
| SRR8749031 | Uninduced | 0.692 |
| SRR8749032 | Uninduced | 1.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.654 |
| SRR8400027 | Control - Root | 36.415 |