Gene detail information of Glyur000048s00002196 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39710.1 | 2.00E-67 | FK506-binding protein 16-2 |
| NR | XP_003630070.1 | 1.41E-118 | hypothetical protein MTR_8g091410 [Medicago truncatula] |
| COG | YP_001660452.1 | 1.00E-24 | FKBP-type peptidyl-prolyl cis-trans isomerase [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|Q9SCY3|FK162_ARATH | 3.00E-88 | Peptidyl-prolyl cis-trans isomerase FKBP16-2, chloroplastic (Precursor) |
| trEMBL | tr|G7LAE7|G7LAE7_MEDTR | 5.00E-119 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 39425 | 42520 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002196.1 | PF00254.23 | FKBP_C | 350 | 448 | 7.40E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.794 |
| SRR1783600 | control | 0.796 |
| SRR1783602 | moderate drought stress | 0.118 |
| SRR1811619 | moderate drought stress | 0.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.060 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.228 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.891 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.895 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.631 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.837 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 68.800 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 68.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.546 |
| SRR2868004 | Drought Stress (root) | 0.368 |
| SRR2967015 | Control (root) | 0.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.833 |
| SRR9715740 | Leaf | 26.605 |
| SRR9715741 | Leaf | 11.811 |
| SRR9715739 | Root | 0.041 |
| SRR9715742 | Root | 0.080 |
| SRR9715743 | Root | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.281 |
| SRR8749028 | MeJA induced 9h | 0.763 |
| SRR8749029 | MeJA induced 9h | 1.701 |
| SRR8749030 | Uninduced | 0.061 |
| SRR8749031 | Uninduced | 0.214 |
| SRR8749032 | Uninduced | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.616 |
| SRR8400027 | Control - Root | 0.681 |