Gene detail

Gene detail information of Glyur000048s00002193

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39830.1	0	Cupredoxin superfamily protein
NR	KHN38199.1	0	L-ascorbate oxidase [Glycine soja]
COG	YP_004538346.1	1.00E-32	L-ascorbate oxidase [Novosphingobium sp. PP1Y]
Swissprot	tr\|P24792\|ASO_CUCMA	0	L-ascorbate oxidase (Precursor)
trEMBL	tr\|I1K578\|I1K578_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G33470.1}

Sequence

Transcript Sequence

>Glyur000048s00002193.1
ATGGTTGAGATTCAGTTGAGCTTAAGGGCTATGCCAACATTTTTATCATTGGTTCTGTATTTGTTGCTCATTTTGGGGAATTCCCACAAGGCTGAAGCCAGAGTTAGACATTACAAATGGGAGGTGAAGTATGAGTATAAGTCCCCTGATTGCTATAAGAAGCTGGTTATCACTATTAATGGTAGGACTCCAGGACCAACCATACAAGCACAAGAGGGTGATACTATCATAGTTGAAGTTAACAACAAATTGCTTACTGAAAACCTTGCAATCCATTGGCATGGGATCAGACAGATTGGAACTCCTTGGTTTGATGGAACAGAAGGGGTAACTCAATGTCCCATACTTCCTGGAGACACTTTTATTTATCAGTTTGTTGTTGACAGGCCTGGTACATATCTTTACCATGCTCACTATGGAATGCAAAGGGAAGCAGGGCTATATGGACTAATTCGTGTTGCACCCCCATTATTCTCAAATGATTGGTACCACCAGAGCACGTATGAACAAGCTGCTGGATTGTCTTCAATTCCTTTTCAATGGGTGAATGAACCTCAGTCACTTTTGATTCATGGAAGAGGAAGATTCAACTGCTCCACATCTCCAAGCTCAAACACTGGTCTTTGTAACTCATCAAATCCTGAATGCTCTCCCTTCGTACAAACTGTGATCCCAGGAAAAACATACCGACTCAGAGTTGCAAGCTTGACTGCTTTATCAGCACTCAGTTTCCAAATAGAGGGCCATAACATGACTGTTGTGGAAGCAGATGGACACTATGTTGAGCCCTTTGTGGTTCAGAATCTCTTCATATACTCTGGTGAGACATACTCAGTTCTTGTGAAAACAAATCAAGACCCATCAAGAAACTATTGGATCACCTCAAACGTGGTGAGCAGAAACAGAACCACCCCACCAGGCTTGGCAATTTTCAACTACTACCCAAATCATCCAAAGCGGTCCCCACCAACGTTTCCACCACGTCCACCAGCTTGGGATCATGTTGAGCCAAGGCTATCTCAAAGCCTCTCAATCAAGGCTCGCCAGGGTTACATAAAGAAGCCCCCAACAACCTCAGATAGGGTCATAGTACTCCTCAACACACAGAATGAAATAAATGGCTATCGCCATTGGTCGGTGAACAATGTCTCATTCACCCTCCCTCACACCCCTTATCTCATTGCCCTCAAAAACAACATCACCGATGCATTCGACCAAACCCCTCCCCCTGATAACTATGATTTTGTTAACTATGACATTTTCAGTGTGAACAATAACTCAAATGCCACTTCTAGCAATGGCATTTATAGGCTAAAGTTCAACACAACGGTGGATGTCATACTCCAAAATGCAAACACCATGAACAAAAACAATAGTGAGACACACCCGTGGCACCTTCATGGGCATGATTTTTGGGTTCTTGGGTATGGGAAGGGAAAGTTTGATGTGAATAAGGATGCGAAAAATTATAACTTGGTGGACCCCATAATGAAGAACACTGTGCCAGTGCATCCCTTTGGTTGGACTGCTCTGAGGTTTCGGTCGGATAATCCTGGTGTGTGGGCTTTCCATTGCCATATAGAGTCTCACTTCTATATGGGAATGGGAGTGGTTTTTGAAGAAGGNATGGACAGGGTTGGGAAGCTCCCTTCATCTATCATGGGTTGTGGTCAAACCAAAGGTTCTCCAAGGCACTAAATTAAACAAACAAGTTCAATTTTTTCCTTTCTTACTTAGCCACGTTACACATACCAGCAGGAGCCAGGCAGGTACTTCGAGACTGGAGTATTGTTCTTTTTTTTTTTTAAATATTATTGTATAATTAGATGATAGAGTAGTTGTGATTATGAGTAGTTATTAAAAAGGTAAAATTGAAACAAAGAAAAAAACTCTACCAAAAGTTGATATTATCATTATATAATAGCTATAGATTAAATCAATTCTTTTTTAGTCCAAGTTACTAAAAACTTCTATCATCTGTCCAAAAGAAACACCATGATATGTATTTTTTTTTAAGAGTTTGTATTATACAAATTGTGTTTTCCTCATTGTATAGGTTGTAAAGTGTAGTTGTACACTTGTGCTCGATCCTTCAAGTCTTTTGTGTAACAAGCGGTTGGAGCAGTTGAGAAATTTTATACACACACGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	30703	33655	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0005576 extracellular region

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002193.1	PF07732.10	Cu-oxidase_3	42	156	1.40E-40
Glyur000048s00002193.1	PF00394.17	Cu-oxidase	158	315	1.70E-45
Glyur000048s00002193.1	PF07731.9	Cu-oxidase_2	418	542	6.70E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.331
SRR1783600	control	0.348
SRR1783602	moderate drought stress	0.047
SRR1811619	moderate drought stress	0.047

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.564
DRR006520	Root Summer glycyrrhizin high producing strain	2.545
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	6.144
DRR006524	Root Summer glycyrrhizin low producing strain	5.876
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.224
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.747

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.884
SRR2868004	Drought Stress (root)	47.205
SRR2967015	Control (root)	53.871

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	246.521
SRR9715740	Leaf	196.945
SRR9715741	Leaf	272.686
SRR9715739	Root	15.625
SRR9715742	Root	52.408
SRR9715743	Root	41.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.499
SRR8749028	MeJA induced 9h	12.304
SRR8749029	MeJA induced 9h	7.983
SRR8749030	Uninduced	178.382
SRR8749031	Uninduced	25.110
SRR8749032	Uninduced	4.898

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.361
SRR8400027	Control - Root	17.349