Gene detail

Gene detail information of Glyur000047s00004021

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32415.1	0	pentatricopeptide (PPR) repeat-containing protein
NR	XP_004511762.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial-like [Cicer arietinum]
COG	YP_006368715.1	7.00E-15	phosphoglucosamine mutase [Modestobacter marinus]
Swissprot	tr\|P0C7R0\|PPR69_ARATH	0	Pentatricopeptide repeat-containing protein At1g32415, mitochondrial (Precursor)
trEMBL	tr\|G7JZT5\|G7JZT5_MEDTR	0	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:AES94389.1}

Sequence

Transcript Sequence

>Glyur000047s00004021.1
ATGAANGAAGAACAACAGTCTCTGCTTCTCAACTCTTGTTCTCGCTTCCCGCTCCCTCAAGGAGTGAAGCTGTCGTACGGCACGTCTGGTTTTCGGGCAGATGCATCGGTTCTGTCGTCGACGGTGTACAGGGTGGGAATCCTGGCGGCTCTGAGATCTCTGAAGACCGAGTCGGTGATCGGCGTAATGATCACGGCGTCACACAACATCNTCTCCGACAACGGCGTCAAAGTCGCTGACCCAAACGGGAGCATGCTCTCTCAGCATTGGGAGNCCTTCGCTGATGCCCTCGCCAATGCCCCTTCTCCCCAACATCTCCTCCAGTTGATAAATGNATTTGTTGAGAAAGAAAGGATTCCATTGGATGGGGTCAGGTGTGCCGAAATACTTTTGGGGAGAGACACTAGGCCGAGCGGAGATGCTTTGCTTGAAGCTGCTAGGCAGGGAGTCACTTCAATTGTTGGAGCCGTTNCGACCGACATGGGGATTTTGACAACTCCGCAACTACATTGGATGGTTCGCGCTAGAAATATGGGCGTGAAAGCCTCAGAGCAGGATTACTTTGAGCAGCTTTCNAGCTCCTTCAGGTGCTTAATGGATTTGATCCCGGCTGGAAAAAGCGAGTTTGATGGGCGGAATGACAAATTGGTTGTGGATGGAGCTAATGGTGTTGGTGGAGTAAAACTTAAAGTGTTGCAGAAATTGTTGAATGTTTTGGATATTGAGGTCCGAAATAGCAGTGATGATGAAGGTGTACTGAATGACGGAGTTGGTGCTGATTATGTGCAGAAAGAGAAGGTTGTTCCACGCGGCTTTGGTTCTAAAGATGCTGGGATAAGGTGTGCTAGTTTGGATGGAGATGCTGATCGGCTTGTTTATTTTTATGTACCACCTGAAAGCAATGGTACGATTGATCTTGTTGATGGGGACAAGATACTATCCCTGTTTGCCATATTTATTAGGGAGCAACTAAGCTTTCTTAACGAGAAAGAAGACATAAAAAACTGCCACCAAGCCCGTCTTGGTATTGTACAGACTGCATATGCAAATGGGGCTTCTACTAATTACCTTAAACACTTGGGACTTGAAGTCAATTTTACTCCAACTGGAGTGAAATATTTGCATGAGAAAGCTGCTGAATTTGATATCGGTATATATTTTGAAGCAAATGGCCATGGAACTGTCTTATTTTCTGAATCTTTCATAGGGTGGTTAGAGGCCAGAACTAGCAAGCTTTCTTCAGGATCCAAAGGTTCAGAAGCGGAAAAGGCTGCTTTGAGATTATTGGCAGTCAGTAAGTTGATCAACCAAGCAGTAGGAGATGCCTTGAGTGGACTGCTCTTGGTGGAAGTCATATTACAGCACATGGGATGGTCAATACATAGATGGAATGAACTTTATCACGATTTACCCAGCAGGCAACTCAAGGTTAAAGTTGCTGACAGAACTGCCGTAGTTACAGCAAATGCAGAAACTGTGGTTGTGAGACCCCCTGGTTTGCAGGAAGCCATCAATGCAGAAACTGCCAAGTACACTCAAGGTAGATGCTTTGTGCGACCATCTGGCACTGAGGATGTTGTTCGTGTATATGCCGAGGCATCCACGCAGGAAGCAGCAGATACCCTAGCCAACTGTGTGGCTAAACTTGTGGACCAATTCTTAGGGCGCTTCTCTGTTTCGAATGTTGAGTATCATCATCCGCATAGGCATCGCAGCAACCATTCTCAACCCTCGAAACCTCCGTTGCCGTTTACGAGAAAATCCGAATGCGACGAGTCTCTGCTCCTCCACTACCTAACGAAGGGGTGGCATCACGAAGCACGAAAGCTCCTTCAGAGTTTTTCCGGCGGAGACCTCCACGCCCGTGTCGTTCGCTGGACCTCGTTGCTCACCAACTATGTTCGACAGGGTTACGTGGACGAAGCTCGAACGTTGTTCGACATAATGCCCCACAGAAACATCGTCACTCACAACGCAATGTTGTCCGGTTACCTTCAATTGGGGATCCTCGACGAGGCTCGCCGGTTTTTCCAGAACATGCCGGAGAGGAACGTCGTTTCCTGGACCGCGATGCTCGGTGGGTATGCGAATGCGGGGAGGATCGAAGATGCGAGGAAGGTGTTCGATGAAATGCCCGAGAAGAATGTAGTTTCGTGGAACTCGATGGTTGCAGGGTTGATTAGGAATGGGGATTTGGAGGAAGCAAGGATGGTTTTTGAACAGACCCCATGTAAAAATGTTGTGTCTTGGAATGCTATGATCTCGGGTTTTGCTGAAAATGGTAGAATGGATGAGGCAAGAGCCTTGTTTGACCAAATGGAATGTAGGAATGTGGTTACTNGGACCAGCATGATATCTGGGTATTGTCGTGTTGGTGAATTGGAAGAGGCTTATAGTCTGTTCCGGATCATGCCGGAGAAAAATGTTGTGTCTTGGACTGCAATGATTGGTGGGTTTGCCTGGAATGGCTTCTATGAAGAGGCAGTGTTTCTTTTTCTTCAGATGATGACACTTTCTGATACAAAACCCAATGGGGAGACCTTTATCTCTCTTGCCTATGCTTGTGCTGGTTTGGGGTTTCCTTGTCTTGGCAAGCAATTGCATGCTCAGGTGATTGTTAATGGTTGGAGGCTTGATGATTATGATGGTAGGTTGCGTACAAGTCTTGTTAGGATGTACTCTGTGTATGGTCTTATGGACTCCACCCGCAATATGCTTGAAGGTGATCTGAGAAATTGTGATGATCAGTCTTTCAATTCCATGATAAATGGTTATGTTCGTGCTGGTCAGTTNGAAAAGGCTCAAGAGTTGTTTGACACAGTTCCCATTCGAAACAGAATTGTGTGGACTTGCATGATTGCTGGGTATCTTAGTGCTGGACAAATATTGAAGGCATGCAATCTCTTTGATAACATGCCTGATAGTGATAGGGATTCCATTGCGTGGACTTCAATGATTTCTGGGTACGTACAAAATGAGCTAATTGCTGAAGCCATTGGCTTATTTGNTGAAATGATGGCTCAAGGTGTTTCTCCTATGAATTCAACGTATGCTGTTCTTTTCGGAGCCATGGGTTCTGTTGCATATCTTGATCAGGGGACGCAATTACATGCTATGCAGTTAAAGACGATATATGAATGTGATTTGCTTCTTGAGAACTCTCTAATTTCAATGTATGCAAAATGTGGAGAGATAGAAGACGCAAATAGGATATTCTCAAACATGACATGCCGAGACAGAATTTCCTGGAACTCCATGATCATGGGCCTTTCTGATCATGGGAGGGCCAGTGAAACTTTAAAGGTGTACCATACCATGCTTGAATTTGGGGTTTACCCAGATGCTGTTACTTTCCTTGGTGTCCTGACAGCATGTGCTCATGCTGGTCTTCTTGATAAAGGGTGGGAGTTATTTAATGCTATGGTAAATGATTATGCACTTCAACCTGGCCATGAGCATTATATTAGTATGATCAATCTTCTGGGCCGAGCAGGAAAAGTGAAGGATGCAGAGGAGTTTGTCTTGAGGCTACCTGTTGAACCAAATCATGCCATTTGGGGGGCATTGATTGGAGTATGTGGGTTGAGTAAAACAGATGCAGATGTTGCTACACGTGCAGCCAAACTACTGCTTGAGTTGGATCCTCTGAATGCACCAGGTCATGTGACCCTTTGTAACATATATGCCTCAAATGATGGGTACATTGAGGAGACAAGTTTAAGAAAAGAAATGAGGATGAAAGGTGTGAGGAAGGCACCTGGATGTAGTTGGATATTGGTGAAAGGTAGAGTTCAGGTTTTCTCATCAGGAGATAGATTAGAACCACAAGTAGAAGATATGTTGCTACAAATTTGA

Protein Sequence

>Glyur000047s00004021.1
MXEEQQSLLLNSCSRFPLPQGVKLSYGTSGFRADASVLSSTVYRVGILAALRSLKTESVIGVMITASHNIXSDNGVKVADPNGSMLSQHWEXFADALANAPSPQHLLQLINXFVEKERIPLDGVRCAEILLGRDTRPSGDALLEAARQGVTSIVGAVXTDMGILTTPQLHWMVRARNMGVKASEQDYFEQLSSSFRCLMDLIPAGKSEFDGRNDKLVVDGANGVGGVKLKVLQKLLNVLDIEVRNSSDDEGVLNDGVGADYVQKEKVVPRGFGSKDAGIRCASLDGDADRLVYFYVPPESNGTIDLVDGDKILSLFAIFIREQLSFLNEKEDIKNCHQARLGIVQTAYANGASTNYLKHLGLEVNFTPTGVKYLHEKAAEFDIGIYFEANGHGTVLFSESFIGWLEARTSKLSSGSKGSEAEKAALRLLAVSKLINQAVGDALSGLLLVEVILQHMGWSIHRWNELYHDLPSRQLKVKVADRTAVVTANAETVVVRPPGLQEAINAETAKYTQGRCFVRPSGTEDVVRVYAEASTQEAADTLANCVAKLVDQFLGRFSVSNVEYHHPHRHRSNHSQPSKPPLPFTRKSECDESLLLHYLTKGWHHEARKLLQSFSGGDLHARVVRWTSLLTNYVRQGYVDEARTLFDIMPHRNIVTHNAMLSGYLQLGILDEARRFFQNMPERNVVSWTAMLGGYANAGRIEDARKVFDEMPEKNVVSWNSMVAGLIRNGDLEEARMVFEQTPCKNVVSWNAMISGFAENGRMDEARALFDQMECRNVVTXTSMISGYCRVGELEEAYSLFRIMPEKNVVSWTAMIGGFAWNGFYEEAVFLFLQMMTLSDTKPNGETFISLAYACAGLGFPCLGKQLHAQVIVNGWRLDDYDGRLRTSLVRMYSVYGLMDSTRNMLEGDLRNCDDQSFNSMINGYVRAGQXEKAQELFDTVPIRNRIVWTCMIAGYLSAGQILKACNLFDNMPDSDRDSIAWTSMISGYVQNELIAEAIGLFXEMMAQGVSPMNSTYAVLFGAMGSVAYLDQGTQLHAMQLKTIYECDLLLENSLISMYAKCGEIEDANRIFSNMTCRDRISWNSMIMGLSDHGRASETLKVYHTMLEFGVYPDAVTFLGVLTACAHAGLLDKGWELFNAMVNDYALQPGHEHYISMINLLGRAGKVKDAEEFVLRLPVEPNHAIWGALIGVCGLSKTDADVATRAAKLLLELDPLNAPGHVTLCNIYASNDGYIEETSLRKEMRMKGVRKAPGCSWILVKGRVQVFSSGDRLEPQVEDMLLQI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	486804	493673	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0071704 organic substance metabolic process

molecular_function

GO:0005515 protein binding

GO:0016868 intramolecular transferase activity, phosphotransferases

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00004021.1	PF02878.11	PGM_PMM_I	57	89	5.70E-06
Glyur000047s00004021.1	PF02878.11	PGM_PMM_I	127	178	6.90E-05
Glyur000047s00004021.1	PF02879.11	PGM_PMM_II	185	294	1.50E-07
Glyur000047s00004021.1	PF02880.11	PGM_PMM_III	308	396	8.80E-06
Glyur000047s00004021.1	PF00408.15	PGM_PMM_IV	476	549	2.60E-11
Glyur000047s00004021.1	PF01535.15	PPR	626	653	0.0059
Glyur000047s00004021.1	PF01535.15	PPR	655	685	0.00031
Glyur000047s00004021.1	PF01535.15	PPR	686	716	9.00E-08
Glyur000047s00004021.1	PF01535.15	PPR	717	741	4.20E-05
Glyur000047s00004021.1	PF12854.2	PPR_1	746	774	1.10E-09
Glyur000047s00004021.1	PF12854.2	PPR_1	776	805	1.20E-07
Glyur000047s00004021.1	PF01535.15	PPR	810	836	3.30E-05
Glyur000047s00004021.1	PF01535.15	PPR	917	939	1.60E-05
Glyur000047s00004021.1	PF01535.15	PPR	948	974	0.00055
Glyur000047s00004021.1	PF13041.1	PPR_2	978	1023	8.30E-09
Glyur000047s00004021.1	PF01535.15	PPR	1053	1076	0.0051
Glyur000047s00004021.1	PF13041.1	PPR_2	1079	1126	3.10E-07
Glyur000047s00004021.1	PF01535.15	PPR	1154	1174	0.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.318
SRR1783600	control	3.434
SRR1783602	moderate drought stress	4.704
SRR1811619	moderate drought stress	4.625

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.933
DRR006520	Root Summer glycyrrhizin high producing strain	6.880
DRR006521	Root Winter glycyrrhizin high producing strain	7.450
DRR006522	Root Winter glycyrrhizin high producing strain	7.345
DRR006523	Root Summer glycyrrhizin low producing strain	4.948
DRR006524	Root Summer glycyrrhizin low producing strain	4.903
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.824
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.769

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.803
SRR2868004	Drought Stress (root)	16.524
SRR2967015	Control (root)	19.102

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.095
SRR9715740	Leaf	10.576
SRR9715741	Leaf	10.390
SRR9715739	Root	4.048
SRR9715742	Root	7.058
SRR9715743	Root	6.385

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.936
SRR8749028	MeJA induced 9h	23.226
SRR8749029	MeJA induced 9h	17.549
SRR8749030	Uninduced	16.958
SRR8749031	Uninduced	15.419
SRR8749032	Uninduced	20.450

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.270
SRR8400027	Control - Root	7.560