Gene detail information of Glyur000047s00004020 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38740.1 | 7.00E-97 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | KHN34870.1 | 1.11E-163 | Phosphorylated carbohydrates phosphatase [Glycine soja] |
| COG | YP_001864962.1 | 3.00E-53 | HAD family hydrolase [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9ZVJ5|SGGP_ARATH | 2.00E-121 | Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp |
| trEMBL | tr|I1LGX9|I1LGX9_SOYBN | 4.00E-164 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04380.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 483209 | 488975 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000047s00004020.1 | PF13419.1 | HAD_2 | 24 | 205 | 6.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.944 |
| SRR1783600 | control | 2.977 |
| SRR1783602 | moderate drought stress | 2.429 |
| SRR1811619 | moderate drought stress | 2.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.457 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.952 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.540 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.745 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.596 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.235 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.842 |
| SRR2868004 | Drought Stress (root) | 10.647 |
| SRR2967015 | Control (root) | 10.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.601 |
| SRR9715740 | Leaf | 12.461 |
| SRR9715741 | Leaf | 10.415 |
| SRR9715739 | Root | 0.957 |
| SRR9715742 | Root | 3.872 |
| SRR9715743 | Root | 3.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.385 |
| SRR8749028 | MeJA induced 9h | 13.798 |
| SRR8749029 | MeJA induced 9h | 13.829 |
| SRR8749030 | Uninduced | 52.980 |
| SRR8749031 | Uninduced | 53.301 |
| SRR8749032 | Uninduced | 53.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.391 |
| SRR8400027 | Control - Root | 15.635 |