Gene detail

Gene detail information of Glyur000047s00004019

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44610.1	5.00E-107	Ras-related small GTP-binding family protein
NR	XP_003549965.2	1.55E-143	PREDICTED: ras-related protein RABH1b-like [Glycine max]
COG	YP_007057145.1	2.00E-19	small GTP-binding protein domain-containing protein [Rivularia sp. PCC 7116]
Swissprot	tr\|O80501\|RAH1B_ARATH	1.00E-137	Ras-related protein RABH1b
trEMBL	tr\|V7CEP3\|V7CEP3_PHAVU	7.00E-143	Uncharacterized protein {ECO:0000313\|EMBL:ESW28614.1}

Sequence

Transcript Sequence

>Glyur000047s00004019.1
GACGGATACTTGCAACTTGCAAGTGAAATAAATAACACNCTCGCTGCAATTGAGAAATCTCTCCGTCTCCGTCTTCTTGTTCCGTTCACCGAGAACCCGANATCAACCCCAACTGAAGCAGGGGTTTTTCTCGGCTTCTTCTGTTTCCTTCCTCTGCTTTTGTGCTTTGCTTCTGCGATTTGAAAATGGCGCCGGTTTCAGCTTTAGCGAAGTACAAGCTGGTGTTCTTGGGTGACCAGTCCGTGGGCAAGACCAGCATAATCACTCGCTTCATGTATGATAAATTCGACAACACCTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAGTCGGCAGACTTTCCTAAACACAACAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTTGTTGAAAAGAGACAAGTCTCTATAGAGGAAGGGGAAGCAAAAGCGCGTGAGGTCAATGTCATGTTTATTGAAACTAGCGCTAAAGCTGGGTTTAATATTAAGGCTCTCTTTCGGAAAATTGCCGCGGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTTCAACTGGCAGTGCTCAATCTCAACCTCAGTCAAGTTTCTCTATAGTTGAGGTGCGTCCGGCAACGGCATCACTGAAAATGGCGCCAGTGTCAGCTCTTGCAAAGTACAAGCTGGTGTTCTTGGGTGATCAATCTGTGGGTAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTTGATAACACTTATCAGGCCACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGGCTGCAGTTGTGGGACACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCCTCTGTTGCTGTCATAGTTTATGATGTTGCAAGCCGTCAAACTTTCCTTAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTTGTTGATAAGAGGCAAGTATCTACAGAGGAAGGGGAAGCTAAATCTCGCGAGCTAAATGTCATGTTTATTGAAGCCAGTGCCAAAGCTGGCTTTAATATAAAGGCTCTCTTTCGAAAAATTGCTGCTGCATTACCTGGAATGGAAACACTGTCTTCCACAAAACAAGAAGATATGGTTGACGTGAACCTAAGATCTTCTGGTGGCAACCAATCTCAACCTCAGTCTGGTGGATGTTCCTGCTGAATGTTCCTTATCTTGGAAGTTCTGTATCTTTATGCTTCATGCTATTTGTTTTGAACTGTACGTGCCTCAAATCTGTAAAGGGGTCATTAGTGTTTTAGATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	471906	481717	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00004019.1	PF00071.17	Ras	11	169	5.60E-57
Glyur000047s00004019.1	PF00071.17	Ras	228	386	2.80E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	80.361
SRR1783600	control	80.334
SRR1783602	moderate drought stress	184.666
SRR1811619	moderate drought stress	182.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	259.985
DRR006520	Root Summer glycyrrhizin high producing strain	253.694
DRR006521	Root Winter glycyrrhizin high producing strain	461.329
DRR006522	Root Winter glycyrrhizin high producing strain	447.191
DRR006523	Root Summer glycyrrhizin low producing strain	534.485
DRR006524	Root Summer glycyrrhizin low producing strain	534.250
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.550
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.066

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	123.159
SRR2868004	Drought Stress (root)	128.949
SRR2967015	Control (root)	148.259

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.321
SRR9715740	Leaf	59.054
SRR9715741	Leaf	59.374
SRR9715739	Root	114.852
SRR9715742	Root	96.033
SRR9715743	Root	101.831

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	96.401
SRR8749028	MeJA induced 9h	67.258
SRR8749029	MeJA induced 9h	72.411
SRR8749030	Uninduced	91.348
SRR8749031	Uninduced	82.583
SRR8749032	Uninduced	110.489

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.947
SRR8400027	Control - Root	65.440