Gene detail information of Glyur000047s00004018 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32710.1 | 8.00E-21 | Cytochrome c oxidase, subunit Vib family protein |
| NR | XP_006590596.1 | 6.20E-63 | PREDICTED: putative cytochrome c oxidase subunit 6b-like [Glycine max] |
| Swissprot | tr|Q9LPJ2|CX6BL_ARATH | 2.00E-28 | Putative cytochrome c oxidase subunit 6b-like |
| trEMBL | tr|I1LGX3|I1LGX3_SOYBN | 2.00E-63 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 468110 | 469788 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000047s00004018.1 | PF02297.12 | COX6B | 77 | 127 | 4.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.242 |
| SRR1783600 | control | 0.237 |
| SRR1783602 | moderate drought stress | 0.332 |
| SRR1811619 | moderate drought stress | 0.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.378 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.446 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.682 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.126 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.819 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.843 |
| SRR2868004 | Drought Stress (root) | 0.311 |
| SRR2967015 | Control (root) | 0.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.355 |
| SRR9715740 | Leaf | 2.142 |
| SRR9715741 | Leaf | 1.368 |
| SRR9715739 | Root | 1.420 |
| SRR9715742 | Root | 2.886 |
| SRR9715743 | Root | 3.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.787 |
| SRR8749028 | MeJA induced 9h | 1.344 |
| SRR8749029 | MeJA induced 9h | 1.697 |
| SRR8749030 | Uninduced | 1.538 |
| SRR8749031 | Uninduced | 0.030 |
| SRR8749032 | Uninduced | 0.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.789 |
| SRR8400027 | Control - Root | 1.003 |