Gene detail information of Glyur000047s00004011 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17140.3 | 0 | pleckstrin homology (PH) domain-containing protein |
| NR | XP_004511755.1 | 0 | PREDICTED: uncharacterized protein LOC101495071 [Cicer arietinum] |
| trEMBL | tr|G7JYP4|G7JYP4_MEDTR | 0 | Vacuolar protein sorting protein {ECO:0000313|EMBL:AES94378.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 377745 | 424136 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000047s00004011.1 | PF12624.2 | Chorein_N | 2 | 114 | 1.00E-37 |
| Glyur000047s00004011.1 | PF00169.24 | PH | 768 | 876 | 8.90E-06 |
| Glyur000047s00004011.1 | PF06101.6 | DUF946 | 1989 | 2164 | 1.20E-07 |
| Glyur000047s00004011.1 | PF06101.6 | DUF946 | 2250 | 2445 | 2.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.439 |
| SRR1783600 | control | 9.405 |
| SRR1783602 | moderate drought stress | 13.181 |
| SRR1811619 | moderate drought stress | 13.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.570 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.357 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.278 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.513 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.735 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.801 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.739 |
| SRR2868004 | Drought Stress (root) | 21.914 |
| SRR2967015 | Control (root) | 23.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.626 |
| SRR9715740 | Leaf | 4.779 |
| SRR9715741 | Leaf | 5.121 |
| SRR9715739 | Root | 1.893 |
| SRR9715742 | Root | 17.174 |
| SRR9715743 | Root | 14.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.678 |
| SRR8749028 | MeJA induced 9h | 4.893 |
| SRR8749029 | MeJA induced 9h | 3.061 |
| SRR8749030 | Uninduced | 2.690 |
| SRR8749031 | Uninduced | 3.299 |
| SRR8749032 | Uninduced | 3.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.415 |
| SRR8400027 | Control - Root | 20.800 |