Gene detail

Gene detail information of Glyur000047s00004010

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17670.1	2.00E-36	Protein of unknown function (DUF581)
NR	XP_004511754.1	5.61E-106	PREDICTED: uncharacterized protein LOC101494744 [Cicer arietinum]
trEMBL	tr\|I1J9P0\|I1J9P0_SOYBN	1.00E-88	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G41170.1}

Sequence

Transcript Sequence

>Glyur000047s00004010.1
AATGGATTCACTGGGACGGATTCTTGTAAGTTGTAACCTGCCGCTGTTTATAGCACCCTCTTCAATTCCGCATACAACCAAACAAAAGCCTTCACCTACCACTTTATAAAACCCCATTCCTTGTATTCTCTTTTTCTATATCACAACGCCTCTCTCTTACTTTCCCTCAACAAACGATTCAAACGACACTTTCATTTTTCGGTTTCTGAAAGGAAAACCGTAAAGAAAAAGAACTTCGTTATTCATGGCTGGGTCTACCAAAAGACATTGTTTCTTGGAAGAGGACGATGGTTTAGCTTCCTTGGCGGACATGGAGCCGGGGTATTCTGGTCATAATCACTTTTATTACCAAAATGGTTTTGTTTCTAGGACGTTGGGTTATGCCACTTTCTACAACAGAGATCTCAGGAACCCATCATCGGTTTCTTCGCCAAGATCTGGGAGGTTTTATGATGCCAGATTTGAAGACCACCAACCCCACTTTCTTCAAGCTTGTTTTCTTTGCAAGAAGCCACTGGGAAACAATAGAGACATCTTCATGTACAGAGGGGACACGCCTTTTTGTAGCGAAGAGTGTAGGCAAGAACAAATAGAGGTAGACGAAGCCAAGGAGAAGAATAGGAACCTTTCTTCTTCAATGAAGGCTTTGAGAAAAAAGGAGCAAAGAAAATCTGCTTCCCCAAACAACACACAGGAGTACTCCTTTCGTGCAGGAACAGTTGCTGCTGCTTAGTTGAAATTTTATAAATGCAAAATAGGCTTTTATAAGAGGAAAAAACAGTGGAACTGCTATGGTGTTCTCGGAAAAAAAAAAGCAAAAAGAAGAAAAAAAAACACATAAAAATGAGTAAAAGAATGAAAAAAGAAGAGTTGAGGTGAAGAAGTTCCAAGTTTATCTTCTTTTCCACGGAGATGGGTCAAAGAATACTCCATAGAGAAGAGATCCCTGCAAATCGAATTTTTGTTCACGAAGCTGTATATGGGAATACACATTGAGAAGTACGCCGCATGTGGGATCCTCTCTACGGAACACGACTCATTTTTCGTTTTTTTGTTAATATTATCAACGCTTTGATTATCTTTCTTTTTTATAGTTGGTTATATGAATATCTTACATGGATGTGTCCAGTAGATTCAGAGTTTTAAGGAAGAAACTGAATNCGAACATAAATTTTTTTCCCTTGGTCCATTTTTCGGCTTTCTTCTGTGAGATCAAATTAAAAATGTTCATATCTTCTGGTCAGGAAAAAAAAAAGGCGCATGGAGGGGTTTTTATATGCTGCGGTTGTTGCCTGCCGGACGAACTAGGGCTGTTTACGGGCCGGTTTGGATTGGATTTGGCTAAATCTATTATCCGAACCGATCAAAATACTACGGGTTGGATTGGTTCGAATTTTTTTGTTTTTGTTTTCTAAATTGGAATCGAACCAACCCGTATATGAATGGGTTGGATCGGTTTGGACCTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	366776	368545	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00004010.1	PF04570.9	DUF581	70	123	1.00E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.100
SRR1783600	control	58.392
SRR1783602	moderate drought stress	48.451
SRR1811619	moderate drought stress	47.992

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	107.984
DRR006520	Root Summer glycyrrhizin high producing strain	107.266
DRR006521	Root Winter glycyrrhizin high producing strain	452.840
DRR006522	Root Winter glycyrrhizin high producing strain	442.590
DRR006523	Root Summer glycyrrhizin low producing strain	67.795
DRR006524	Root Summer glycyrrhizin low producing strain	67.276
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.033

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.177
SRR2868004	Drought Stress (root)	18.798
SRR2967015	Control (root)	30.123

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.047
SRR9715740	Leaf	7.083
SRR9715741	Leaf	4.039
SRR9715739	Root	2.748
SRR9715742	Root	10.069
SRR9715743	Root	6.766

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.924
SRR8749028	MeJA induced 9h	18.545
SRR8749029	MeJA induced 9h	33.419
SRR8749030	Uninduced	6.238
SRR8749031	Uninduced	19.777
SRR8749032	Uninduced	31.899

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.380
SRR8400027	Control - Root	88.100