Gene detail

Gene detail information of Glyur000047s00003997

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33950.1	2.00E-138	Protein kinase superfamily protein
NR	XP_006572904.1	0	PREDICTED: protein kinase isoform X1 [Glycine max]
COG	YP_004862245.1	3.00E-28	protein kinase domain-containing protein [Candidatus Chloracidobacterium thermophilum B]
Swissprot	tr\|P0C5D6\|SAPK3_ORYSJ	0	Serine/threonine-protein kinase SAPK3
trEMBL	tr\|I1J9Q1\|I1J9Q1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G41260.1}

Sequence

Transcript Sequence

>Glyur000047s00003997.1
ATGGAGGAACGGTATGAGACATTGAAGGAGCTTGGTTCGGGGAACTTTGGAGTGGCTAGGTTGGCCAGAGACAAGAAAACAGGGGAGCTTGTTGCTGTNAAATACATTGAAAGGGGAGAAAAGATTGATGAGAATGTNCAAAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTCTGACCCCAACTCATTTAGCTATTGTCCTGGAGTATGCTGCTGGTGGTGAACTTTTTGATAGGATATGCACCGCTGGGCGATTGAGTGAAGATGAGGTTGTAAAGTGTATATATATGTATAAATGTATAAATTACCAAGTTATTTTTTTTAATGAATTAACTATATTGCAGGCAAGATTTTTCTTCCAGCAACTAATATCTGGGGTTAGCTATTGTCACTCCATGCAAATTTGTCATAGGGATCTGAAATTGGAGAACACTCTATTGGACGGAAATCCAGCTCCTAGACTCAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCATTACTGCACTCTCAACCCAAATCAACAGTTGGAACTCCTGCATACATTGCTCCNGAGGTTTTGTCACGAAAGGAGTATGATGGGAAGATTGCAGATGTTTGGTCGAGTGGTGTNACTCTTTATGTCATGTTAGTTGGATCATACCCATTTGAAGATCCAGAAGATCCTAGAGATTTCAGAAAGAATATTGGGAGAATAGTGAATGTCCAATACTCCATACCTGACTATGTACGTGTATCTGAGGAGTGTAGGCATCTTCTCTCTCGTATTTTTGTTGCCAATCCAGCCAAGAGGATCACCATCTCGGAGATAAAGCAGCACCCTTGGTTTTGGAAGAACATGCCTAGAGAGATGATTGAGGCTGATAGAAAAGGTTACAAGGAAACANCAGAAGACAAACCAAGCCAAAGTGTGGAAGACATCATGCGGATCATACAAGAAGCAATGACACCGGGGATAAAAACCAAAGGTGGAACTGGCTCATCGGTTGTTGGTGAGGTTGAAGAGGAAGTTGGTGTTAGTGGCGACTATGTGAAACTTGTGTGACCAAGGCCTTAATTAATTTGTGTACAACGGATTGTTTAGAATACTAGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	265410	268267	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14498	SNRK2	EC:2.7.11.1	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003997.1	PF00069.20	Pkinase	5	286	1.10E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.712
SRR1783600	control	6.750
SRR1783602	moderate drought stress	4.703
SRR1811619	moderate drought stress	4.772

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.734
DRR006520	Root Summer glycyrrhizin high producing strain	7.846
DRR006521	Root Winter glycyrrhizin high producing strain	35.146
DRR006522	Root Winter glycyrrhizin high producing strain	34.146
DRR006523	Root Summer glycyrrhizin low producing strain	10.712
DRR006524	Root Summer glycyrrhizin low producing strain	11.414
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.941
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.568

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.805
SRR2868004	Drought Stress (root)	2.378
SRR2967015	Control (root)	3.160

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.982
SRR9715740	Leaf	2.807
SRR9715741	Leaf	4.610
SRR9715739	Root	1.741
SRR9715742	Root	10.727
SRR9715743	Root	9.455

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.512
SRR8749028	MeJA induced 9h	2.118
SRR8749029	MeJA induced 9h	5.421
SRR8749030	Uninduced	0.737
SRR8749031	Uninduced	0.066
SRR8749032	Uninduced	0.419

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.688
SRR8400027	Control - Root	11.663