Gene detail information of Glyur000047s00003994.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74950.1 | 3.00E-17 | TIFY domain/Divergent CCT motif family protein |
| NR | NP_001237160.1 | 2.23E-58 | uncharacterized protein LOC100306332 [Glycine max] |
| Swissprot | tr|Q9S7M2|TI10B_ARATH | 2.00E-21 | Protein TIFY 10B |
| trEMBL | tr|C6SYY4|C6SYY4_SOYBN | 8.00E-59 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04130.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 257201 | 259776 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000047s00003994.1 | PF06200.9 | tify | 50 | 79 | 2.10E-16 |
| Glyur000047s00003994.1 | PF09425.5 | CCT_2 | 149 | 173 | 3.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 47.962 |
| SRR1783600 | control | 47.867 |
| SRR1783602 | moderate drought stress | 92.250 |
| SRR1811619 | moderate drought stress | 91.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 144.698 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 142.703 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.058 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.087 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 37.911 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.382 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.278 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 55.598 |
| SRR2868004 | Drought Stress (root) | 109.663 |
| SRR2967015 | Control (root) | 59.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 837.269 |
| SRR9715740 | Leaf | 753.745 |
| SRR9715741 | Leaf | 1156.752 |
| SRR9715739 | Root | 110.355 |
| SRR9715742 | Root | 310.871 |
| SRR9715743 | Root | 248.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 118.687 |
| SRR8749028 | MeJA induced 9h | 171.009 |
| SRR8749029 | MeJA induced 9h | 322.183 |
| SRR8749030 | Uninduced | 965.694 |
| SRR8749031 | Uninduced | 946.991 |
| SRR8749032 | Uninduced | 815.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 83.277 |
| SRR8400027 | Control - Root | 65.518 |