Gene detail

Gene detail information of Glyur000047s00003991.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07440.2	4.00E-163	glutamate dehydrogenase 2
NR	XP_003517396.1	0	PREDICTED: glutamate dehydrogenase 2-like [Glycine max]
COG	YP_004270382.1	5.00E-120	glutamate dehydrogenase [Planctomyces brasiliensis DSM 5305]
Swissprot	tr\|Q38946\|DHE2_ARATH	0	Glutamate dehydrogenase 2
trEMBL	tr\|I1J9Q7\|I1J9Q7_SOYBN	0	Glutamate dehydrogenase {ECO:0000256\|PIRNR:PIRNR000185}

Sequence

Transcript Sequence

>Glyur000047s00003991.1
TATGGATGGAAACACACACCCTTAATAAATAAATAATGATCTAATTACGAGTTCATCCTCTCCACTCCAACGTAATCAATATCAATGCCCTGTTTGTGTCCACAGAGAACTTCTTCCGTTTCACTTTCACTGTAACATCACTGAAAATCGAGTCAACATTTCAGCTATGAACGCTCTAGCAGCCACCAACCGTAACTTCCGACGTGCAGCTCGAATTCTCGGTTTGGACTCCAAGCTTGAGAATAGCCTTCTCATTCCATTCAGAGAAATCAAAGTTGAGTGTACGATCCCAAAAGATGATGGAACTCTGGTTTCCTATGTCGGTTTCAGGATTCAACATGACAATGCTCGTGGACCTATGAAAGGCGGAATTCGTTATCACCCCGAAGTTGACCCTGATGAAGTGAATGCTCTAGCTCAGCTAATGACATGGAAAACAGCTGTGGCAGACATTCCATATGGAGGAGCAAAGGGTGGAATTGGGTGCAACCCAAAGGACCTGAGCATGAGTGAGTTGGAACGCCTCACTCGTGTTTTCACCCAAAAGATCCATGATCTCATTGGCATTCAGAGGGATGTTCCTGCCCCCGACATGGGAACTAATGCACAGACAATGGCTTGGATTCTCGATGAGTATTCAAAGTTTCATGGGCATTCACCAGCAGTTGTGACTGGCAAGCCTATTGGGTTTGGAAACGTGGGGTCTTGGGCTGCTAGGTCAATTTTTGAGAGAGGAGGTAAGGTGGTCGCCGTGAGTGACATCAGTGGTGCCATTAAAAACCCAAATGGAATTGATATTGCCGCTCTTCTGAAACACAAGGAAGGCAATGGAAGTTTGAAGGACTTCCCAGGAGGAGATGCCATGGATCCAAAGGACTTGCTCTTTCATGAATGTGATGCTCTCGTCCCATGTGCCTTGGGTGGTGTTCTCAACAAGGAAAATGCTGCTGATGTGAAAGCCAAGTTTATTATAGAAGCTGCAAATCATCCCACTGACCCNGATGCTGATGAGAATATTCAAGGATTTATGTGGGATGAAGAGAAAGTGAACCGTGAGCTAAAGAAGTACATGACTAAAGCTTTCCGGAACATAAAGGCAATGTGTCAAATTCACAATTGCGACTTGCGAATGGGAGCTTTCACTCTTGGAGTTAACCGTGTTGCTCGCGCTACTCTTTTGAGGGGTTGGGAAGCTTAGGCAAAGAGAAAAACCTTCATCATTATCATTACTTGCTATTATAAAAGTTTGCTAGCTTAATTGCNTTCTTCCCTTCCCCTTCTCCTTTTGTCTATTTGTTCTCAACTAGTCTCCTTTTATTTTTCTCATTTCTTTGTTATCTTANTTTAGTTTTAGTTCAGTGGTTGAGTGTAGCCATAGTTATATCGGGACTTATCATTCATTGTTGCCTGAGAACGACACATGAAGTTACAGCCAGATGTGTTTCTTCATCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	243740	247296	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00261	GLUD1_2, gdhA	EC:1.4.1.3	Carbon metabolism	map01200
			Nitrogen metabolism	map00910
			Alanine, aspartate and glutamate metabolism	map00250
			Arginine biosynthesis	map00220
			D-Glutamine and D-glutamate metabolism	map00471
			Proximal tubule bicarbonate reclamation	map04964

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003991.1	PF02812.13	ELFV_dehydrog_N	33	160	1.50E-46
Glyur000047s00003991.1	PF00208.16	ELFV_dehydrog	174	284	7.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.292
SRR1783600	control	1.242
SRR1783602	moderate drought stress	1.162
SRR1811619	moderate drought stress	1.190

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.852
DRR006520	Root Summer glycyrrhizin high producing strain	5.092
DRR006521	Root Winter glycyrrhizin high producing strain	5.976
DRR006522	Root Winter glycyrrhizin high producing strain	5.901
DRR006523	Root Summer glycyrrhizin low producing strain	2.175
DRR006524	Root Summer glycyrrhizin low producing strain	2.260
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.683
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.993
SRR2868004	Drought Stress (root)	10.794
SRR2967015	Control (root)	10.179

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.884
SRR9715740	Leaf	6.229
SRR9715741	Leaf	10.520
SRR9715739	Root	2.647
SRR9715742	Root	7.775
SRR9715743	Root	5.320

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.269
SRR8749028	MeJA induced 9h	27.342
SRR8749029	MeJA induced 9h	19.759
SRR8749030	Uninduced	82.171
SRR8749031	Uninduced	62.682
SRR8749032	Uninduced	75.925

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.252
SRR8400027	Control - Root	8.609