Gene detail information of Glyur000047s00003990 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47110.1 | 1.00E-67 | Chlorophyll A-B binding family protein |
| NR | XP_003549949.1 | 7.31E-102 | PREDICTED: uncharacterized protein LOC100780555 [Glycine max] |
| trEMBL | tr|I1MV75|I1MV75_SOYBN | 3.00E-102 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G15730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 241996 | 243515 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000047s00003990.1 | PF00504.16 | Chloroa_b-bind | 153 | 205 | 0.0002 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.943 |
| SRR1783600 | control | 12.916 |
| SRR1783602 | moderate drought stress | 7.643 |
| SRR1811619 | moderate drought stress | 7.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.720 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.147 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.544 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.902 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.129 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 187.861 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 185.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.316 |
| SRR2868004 | Drought Stress (root) | 4.772 |
| SRR2967015 | Control (root) | 3.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 123.553 |
| SRR9715740 | Leaf | 86.953 |
| SRR9715741 | Leaf | 77.901 |
| SRR9715739 | Root | 8.196 |
| SRR9715742 | Root | 3.803 |
| SRR9715743 | Root | 5.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.240 |
| SRR8749029 | MeJA induced 9h | 0.150 |
| SRR8749030 | Uninduced | 0.039 |
| SRR8749031 | Uninduced | 0.025 |
| SRR8749032 | Uninduced | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.846 |
| SRR8400027 | Control - Root | 15.935 |