Gene detail information of Glyur000047s00003989 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17030.1 | 3.00E-85 | expansin-like B1 |
| NR | XP_003517398.1 | 9.66E-162 | PREDICTED: expansin-like B1-like [Glycine max] |
| Swissprot | tr|O23547|EXLB1_ARATH | 7.00E-111 | Expansin-like B1 (Precursor) |
| trEMBL | tr|I1J9Q9|I1J9Q9_SOYBN | 4.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G41330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 236113 | 238286 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000047s00003989.1 | PF03330.13 | DPBB_1 | 63 | 140 | 4.50E-13 |
| Glyur000047s00003989.1 | PF01357.16 | Pollen_allerg_1 | 154 | 234 | 8.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.638 |
| SRR1783600 | control | 2.464 |
| SRR1783602 | moderate drought stress | 3.583 |
| SRR1811619 | moderate drought stress | 3.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.470 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.352 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.952 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.465 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.998 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.986 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.087 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 110.774 |
| SRR2868004 | Drought Stress (root) | 84.190 |
| SRR2967015 | Control (root) | 123.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.217 |
| SRR9715740 | Leaf | 1.590 |
| SRR9715741 | Leaf | 9.566 |
| SRR9715739 | Root | 1.989 |
| SRR9715742 | Root | 3.932 |
| SRR9715743 | Root | 3.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.292 |
| SRR8749028 | MeJA induced 9h | 0.507 |
| SRR8749029 | MeJA induced 9h | 0.103 |
| SRR8749030 | Uninduced | 0.457 |
| SRR8749031 | Uninduced | 0.338 |
| SRR8749032 | Uninduced | 1.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.623 |
| SRR8400027 | Control - Root | 7.466 |