Gene detail

Gene detail information of Glyur000047s00003988.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22740.2	0	SU(VAR)3-9 homolog 6
NR	XP_004511737.1	0	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum]
COG	YP_003654072.1	1.00E-24	SRA-YDG domain-containing protein [Thermobispora bispora DSM 43833]
Swissprot	tr\|Q8VZ17\|SUVH6_ARATH	0	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6
trEMBL	tr\|K7K4X0\|K7K4X0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G41340.2}

Sequence

Transcript Sequence

>Glyur000047s00003988.1
ATGAATTCTGAGCCATCAAGAGGAATGACAACACCAATCAGTAATGGACATTCTGAAGAAGGAATTGGGAAGCCATTGATGGAAAATGGGGACTGTACTTTCCTTGCTTGGCCCATGTATAAGCGGCGTAAAGTTTCTGCCATTCGTGATTTCCCAGAAGGCTGTGGACCATCTGCTTCCGGGATTGATCCGGTTTTAAAGGTAGATATTGCTGGTTTTGGTTCTGCTAATGNTACAATTGTTGAGGATAAGGGTGGCGAACATTTAGGGGGTGATACTGTTAGTTCCAAGCGTGAAAATGATCCTCGACATTCTAACTTCAAAAAAGATTCGTTTATTACAGAAACTCTTGGCCAAACAAGTGACTGTAGTTTGAAGAAGGAAAATCCTGTGGNCTCATCTCATCAAGTGGATGTGCCTACTTTAGCAAATGATGAACCTGCAAAAATGGCAATGGTTGGCATGGAAACTTTGGATACAAAATTTGCAATAAAAGAAAATTCTGTTAAACAAGATTCTTCTTTTATATCAAAGTCATCTTCTCCAGAGGGTGAGGCGGCTATGTCTGATGAGTCAAAATCCTTGTCATCAAATATCAATATAGCTGGTTNTAGTGCTTGTATCAAGGATTCTCCAGCTAGAAGGTATCCTCCTCAAAGAAAAGTTTCAGCTGTCCGAGACTTTCCTCCTTTATGTGGACGCAATGCTCCCCCTCTCCGTAAGGATGAGTGTCTAACAGGGATCTCTTGTTTGAATAACAAGAGAGTGGGTCAACAAAACTTGGCTGTAAATGACAGTCCATTGAAAAAAGTAGCAGCCACTGATGTAAAAGAAGTGGAAAATAACATTCAAGATAAATATGGTCACAAGAGAAAGCTTGCTGACATTGTTCAAGCTGATTCTGAAGGGAATGCAACACAGAAAGGCAAGAAGCTGGATGTATTTGAACCATCTTCTGAGTTGAGGTTGCCACTGGAAAACACAAGAGAAAAGTACAATACACTTCCTGAAAAAAGTAATCATCGCCAGCTTTACATAAACTCCAAGGCAGTGGTTAAAGAGGAAAACAGGGACACNGTGCAGGTTGTGGGAACATCAGGGCTAGAGGTTATAGTTTATCCAGAAGTCCAAAGTCCTGAGACAAAGCCTTTGGCTATGTCTAGTCAGCATAAGCTGAAACGAGATTNTAATAGATTGAAGGTCTCATCCAACAGGAAAGTAGTGCTAGGTTTGATGTCTGAATCAGAATGTCCTTGGAGGTCTTATAAAGATTCTTCCAAATCTAAATTGACAGTTGGTACAAATGAAAACAAGGGAAAGAAGGTTGGATTTTTTGCACGGCTAGACAGGTCTAAAACTGCTATCAAGACCAAAGATGCACTGAATCATTCTGGGCAGAAGCCGTTGAAAAAGATGAAAGGAAATGCTGCTTCTGATGATATGGGTCAATTAGTAATTTGGGAAAAGAATGATTCTCTTGACCCTNCTGAAAATAACAAAGGCTTTCAAGTTGTCCCAAAATCACATGGTTTGAATGTAAATGTTCCTCCTTTAGGTCATCGTAATTTCATCGGTCATGAGAATGATTCAAATGTGACCCGAGATAAAGTGCGGGAAACATTACGCTTGTTTCAAGCTGTTTCTAGAAAGATTTTACGGGAATTAGAAGCAGCAAAGTCTGATGATCGATCAAGGAGGATTGATTTACAAGCTGCGAAGATCCTTAAGGATAAAGAGAAATATGTTAACACAGGCAAGCAGATCTTGGGATCCGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAATACAGAGTGGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTGAAGCACAATGGTAAGATCCTTGCGACTAGTATTGTTGCGTCGGGGGGCTATGCGGATGATTTGGATAATTCNGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCANTGGTAAAGAACCAGAAGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGTGGCTCTGAATCAATGGATGGAAAATGCAGGACATATGTTTATGATGGACTGTATCTAGTTGAGTCATATTGGCAGGATATGGGGCCACATGGGAAGCTGGTTTATAGGTTTCGATTGCGAAGAATCCCAGGTCAGCCAGAGCTTGCTTTGAAGGAAGTGAAGAAATCCAAAAAGTTCAAAACAAGAGAAGGTCTATGTGTCCATGATATTTCTTATGGGAAAGAGCGAATTCCCATATGTGCTGTGAATACCATAGATGATGAAAAACCCCCGCCATTTAAATACATAACTAGCATGATATATCCTGATTGTTGCAATCTCGATCCCCCTGAAGGCTGTGATTGTACTAATGGATGCTCTGACCTGGAGAAATGTTCTTGTGTAGTCAAAAATGGGGGAGAGATCCCATTTAATCATAATGGGGCTATTGTAGAAGTAAAGCCTCTAGTCTATGAGTGTGGACCTAATTGCAAGTGCCCTTCAACCTGCCATAACAGAGTCAGCCAACTTGGTATAAAATTTCAACTTGAAATTTTTAAAACCAATTCAAGGGGATGGGGTGTAAGATCCCTAAATTCCATCCCTTCTGGGAGTTTTATCTGCGAATATATAGGAGAGGTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGACATTGGAAATAACTTCAGCAACAGCGCTCTTTGGGATGGACTTTCANCGCTTATGCCTGATTCGCAGCCAAATGCTTGTGATTCAATGAAGGATGGTGGCTTCACTATCGATGCTGCTCAGTATGGTAATGTGGGAAGATTTATCAACCATAGTTGCTCTCCGAATCTTTATGCTACGAATGTCCTTTATGACCATGATGACAAGAGGATTCCTCACGTTATGTTTTTCGCTTTTGAGAACATTCCTCCCTTGCAAGAGCTGAGTTATGATTACAATTATACGATCGATCAAGTCCGTGATTCCGATGGCAATATAAAAAGGAAGAATTGTTATTGTGGTTCTGTGGCATGTACTGGTAGGATGTATTGA

Protein Sequence

>Glyur000047s00003988.1
MNSEPSRGMTTPISNGHSEEGIGKPLMENGDCTFLAWPMYKRRKVSAIRDFPEGCGPSASGIDPVLKVDIAGFGSANXTIVEDKGGEHLGGDTVSSKRENDPRHSNFKKDSFITETLGQTSDCSLKKENPVXSSHQVDVPTLANDEPAKMAMVGMETLDTKFAIKENSVKQDSSFISKSSSPEGEAAMSDESKSLSSNINIAGXSACIKDSPARRYPPQRKVSAVRDFPPLCGRNAPPLRKDECLTGISCLNNKRVGQQNLAVNDSPLKKVAATDVKEVENNIQDKYGHKRKLADIVQADSEGNATQKGKKLDVFEPSSELRLPLENTREKYNTLPEKSNHRQLYINSKAVVKEENRDTVQVVGTSGLEVIVYPEVQSPETKPLAMSSQHKLKRDXNRLKVSSNRKVVLGLMSESECPWRSYKDSSKSKLTVGTNENKGKKVGFFARLDRSKTAIKTKDALNHSGQKPLKKMKGNAASDDMGQLVIWEKNDSLDPXENNKGFQVVPKSHGLNVNVPPLGHRNFIGHENDSNVTRDKVRETLRLFQAVSRKILRELEAAKSDDRSRRIDLQAAKILKDKEKYVNTGKQILGSVPGVEVGDEFQYRVELNIIGLHRQIQGGIDYVKHNGKILATSIVASGGYADDLDNSDVLIYTGQGGNVMSXGKEPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKCRTYVYDGLYLVESYWQDMGPHGKLVYRFRLRRIPGQPELALKEVKKSKKFKTREGLCVHDISYGKERIPICAVNTIDDEKPPPFKYITSMIYPDCCNLDPPEGCDCTNGCSDLEKCSCVVKNGGEIPFNHNGAIVEVKPLVYECGPNCKCPSTCHNRVSQLGIKFQLEIFKTNSRGWGVRSLNSIPSGSFICEYIGEVLEDKEAEQRTGNDEYLFDIGNNFSNSALWDGLSXLMPDSQPNACDSMKDGGFTIDAAQYGNVGRFINHSCSPNLYATNVLYDHDDKRIPHVMFFAFENIPPLQELSYDYNYTIDQVRDSDGNIKRKNCYCGSVACTGRMY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	231481	234600	+

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11420	EHMT	EC:2.1.1.43	Lysine degradation	map00310
			Longevity regulating pathway - mammal	map04211

Gene Ontology

biological_process

GO:0016571 histone methylation

GO:0034968 histone lysine methylation

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0018024 histone-lysine N-methyltransferase activity

GO:0042393 histone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003988.1	PF02182.12	SAD_SRA	587	737	1.20E-59
Glyur000047s00003988.1	PF05033.11	Pre-SET	761	858	1.50E-19
Glyur000047s00003988.1	PF00856.23	SET	877	1009	9.90E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.705
SRR1783600	control	6.601
SRR1783602	moderate drought stress	8.126
SRR1811619	moderate drought stress	8.097

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.823
DRR006520	Root Summer glycyrrhizin high producing strain	5.766
DRR006521	Root Winter glycyrrhizin high producing strain	3.450
DRR006522	Root Winter glycyrrhizin high producing strain	3.448
DRR006523	Root Summer glycyrrhizin low producing strain	5.818
DRR006524	Root Summer glycyrrhizin low producing strain	5.520
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.194
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.224

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.783
SRR2868004	Drought Stress (root)	8.004
SRR2967015	Control (root)	7.497

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.234
SRR9715740	Leaf	5.331
SRR9715741	Leaf	5.573
SRR9715739	Root	0.731
SRR9715742	Root	4.711
SRR9715743	Root	3.825

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.037
SRR8749028	MeJA induced 9h	5.528
SRR8749029	MeJA induced 9h	2.621
SRR8749030	Uninduced	1.935
SRR8749031	Uninduced	2.086
SRR8749032	Uninduced	1.615

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.231
SRR8400027	Control - Root	7.120