Gene detail

Gene detail information of Glyur000047s00003984

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47180.2	9.00E-73	Plant VAMP (vesicle-associated membrane protein) family protein
NR	XP_006590580.1	1.34E-133	PREDICTED: vesicle-associated protein 2-1-like isoform X2 [Glycine max]
Swissprot	tr\|Q9LVU1\|VAP21_ARATH	2.00E-101	Vesicle-associated protein 2-1, N-terminally processed
trEMBL	tr\|I1LGU4\|I1LGU4_SOYBN	5.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G04030.1}

Sequence

Transcript Sequence

>Glyur000047s00003984.1
GTCTGGCACCAAAAACAGAGAGAGGCAGAGCAGAGGGCACAGACACTCACTCACTCCACTCACTCACTCTCAGACCTGAAGCGATCTAGGTGGCTAAAATTTCGGGTTATTTTGGTTATTGGACTTTGTAGCCATCGGTACCCCATGCTCCTCGTTCCACCACTCATTCCCTTCCTTTCAACCCTCATTCCCCTTTCTCTCTTCTCTTCTCTTCTCTTCTCTCACGGTCACCCACACCCACCCCTTTTATCCCCTCTCGCTTCTTTTGCGGTATGTTGATTTGATTGTGTCTCTGTTTGTCATNTCTCTCTAATTCGTTCAGCCACCCNTTGCTATTCCCATTGCCCATTGCAGAAGACAAAAAAACACTCACTTACCCTCTTCGTCATGACTGCAACTCCACTCATCTCTATTAGTCCCGATGAACTCAGGTTCCATTTTGAGCTGGAGAAGCAAACATTTTGCGATCTTAAAGTCCTGAATAACACACAGAACTATGTTGCNTTCAAGGTCAAAACCACTTCACCTAAGAAGTACTTTGTACGACCAAACACTGGTGTTATACAGCCCTGGGACTCGTGTATCATCAGAGTCACCCTCCAAGCCCAACGTGAATACCCTCCAGACATGCAATGTAAAGACAAGTTTCTCTTACAGAGTACAGTTGTGAATCCAAATACTGATGTTGATGAGCTTCCACCAGATACTTTTAATAAGGAAAGTGGTAATTCAATAGAGGAGTTGAAACTAAGAGTTGCTTACATCTCTCCTACCTCGCCCAATGGAAGCTCTGAAGATGATGCAATGAAGAATTCCACAGAAAAATTTGATACCTCTTCTAGTCAGACTTTACAGCTCCTGAAGGAAGAAAGAGATGCCGCTGCCAGACAAACGCGACAGCTGCAACAGGAACTGGACATGCTGAAAAGACAAAGAAACCGAAGAGGGGATCCTGGGTTTTCCTTCAGCTTCGCCATTTTTGTTGGTCTCCTTGGAGTTTTGCTTGGCTTTCTTTTGAAACTTTTATTCTCTTCACCATCTACAGAATGATTGACGCTGTTAGTAAAACCTTTNCATGCATGCAGCCTTTCCGCGTTGTTCACTGTAATAGTGTAAAGTTCTATATTCTTTCTTTTTAATGAGATATTTTCCAATTTGCTTCTTTCCTTACTATACTATCTTTGGGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	201206	205265	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005789 endoplasmic reticulum membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003984.1	PF00635.21	Motile_Sperm	7	110	2.70E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.334
SRR1783600	control	14.803
SRR1783602	moderate drought stress	14.027
SRR1811619	moderate drought stress	13.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.332
DRR006520	Root Summer glycyrrhizin high producing strain	11.438
DRR006521	Root Winter glycyrrhizin high producing strain	2.228
DRR006522	Root Winter glycyrrhizin high producing strain	2.247
DRR006523	Root Summer glycyrrhizin low producing strain	10.252
DRR006524	Root Summer glycyrrhizin low producing strain	10.079
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.300
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.245

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.574
SRR2868004	Drought Stress (root)	8.343
SRR2967015	Control (root)	9.194

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.799
SRR9715740	Leaf	6.520
SRR9715741	Leaf	6.766
SRR9715739	Root	8.570
SRR9715742	Root	8.251
SRR9715743	Root	9.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.978
SRR8749028	MeJA induced 9h	5.573
SRR8749029	MeJA induced 9h	5.520
SRR8749030	Uninduced	2.145
SRR8749031	Uninduced	0.288
SRR8749032	Uninduced	0.971

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.574
SRR8400027	Control - Root	12.849