Gene detail

Gene detail information of Glyur000047s00003982

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17560.1	3.00E-58	Ribosomal protein L19 family protein
NR	XP_003611376.1	7.93E-126	50S ribosomal protein L19 [Medicago truncatula]
COG	YP_001320552.1	3.00E-21	50S ribosomal protein L19 [Alkaliphilus metalliredigens QYMF]
Swissprot	tr\|P82413\|RK19_SPIOL	1.00E-79	50S ribosomal protein L19, chloroplastic (Precursor)
trEMBL	tr\|B7FKU8\|B7FKU8_MEDTR	3.00E-126	Uncharacterized protein {ECO:0000313\|EMBL:AFK48433.1}

Sequence

Transcript Sequence

>Glyur000047s00003982.1
CCCAACCAAAGTGTNATTCACAGTTCACACGTGTGGAACGGATAGAAACAGATAAGGGCGCTTGTTGTTGCTGCTGTAGTGTTTTCCCCCTCCTCCTCCTCCTCCTTATGGCTTCCCAAGTTCTTCTTCAGGCTCTGTTTGCCCCCAATCAGTGTTCTCCGACCAAGCTCGGTTTCTCTTCTTCTTGCAAAGCCTCCANCCTCGGTTCTCGTAACTTACCGTTAATTTCCAGCGTTTCTTCGTCCTCAATTTCATGGCGTTGCAGTCCTCTCATTGCTAAACCTACTTTTGTTGTGAGAGCTGAGTCCAACCCCGATTCGGATAATGTTGGTGAAATTCCAGAAGCTTCGGATAATGTTGATGAAGTTCCCGAAGCAGAAGCAGAACAGGNTTCGGATTCTGAACCGGAGGTGGAGCAACAGAAGCCACCCAGAAAACCCCGAGTCAAGCTTGGAGACATTATGGGGATATTGAATCAGAGGGCAATTGAGGCTTCGGATGAAGCGAGGCCGACTCCAAACATTAGGACTGGAGATGTTGTGGAAATCAGATTGGAAGTTCCTGAGAACAGGCGTAGGTTGTCAATTTATAAAGGTATTGTCATCTCAAAACAAAATGCTGGTATTCACACAACTATACGAGTCCGAAGAATTATTGCTGGCACAGGGGTTGAGATAGTCTTCCCAATTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAGCCACCGTAAGGTCAGGAGGGCAAGATTGTACTATCTAAGAGACAAGCTTCCCAGATTATCCACTTTCAAATGATAAGGTTACGCACTTATCATCCCGTTCTTCTTCAAAGTAGTCTGCTGATCCATGAGAAGTGATTGCAGGGCCATAATTTGATTATTTTAATTTGTTGTGTTGTAGAATATATCATCTTTCTTCCCCTTAATCTATCCTCTGAGAAATGGAAACAAGTGTATGTTGCCCTTGATAATAATGAGAAATTTGAAGTGTTTCTTCTGCATCCTTATTTTTCGGTAGAAAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	194264	196760	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003982.1	PF01245.15	Ribosomal_L19	127	222	9.10E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.135
SRR1783600	control	29.089
SRR1783602	moderate drought stress	20.749
SRR1811619	moderate drought stress	20.512

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.541
DRR006520	Root Summer glycyrrhizin high producing strain	38.796
DRR006521	Root Winter glycyrrhizin high producing strain	27.087
DRR006522	Root Winter glycyrrhizin high producing strain	26.552
DRR006523	Root Summer glycyrrhizin low producing strain	35.409
DRR006524	Root Summer glycyrrhizin low producing strain	35.688
DRR006525	Leaf Summer glycyrrhizin high producing strain	204.320
DRR006526	Leaf Summer glycyrrhizin high producing strain	203.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.198
SRR2868004	Drought Stress (root)	25.919
SRR2967015	Control (root)	27.526

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	183.147
SRR9715740	Leaf	229.278
SRR9715741	Leaf	141.797
SRR9715739	Root	20.386
SRR9715742	Root	19.443
SRR9715743	Root	19.518

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.325
SRR8749028	MeJA induced 9h	30.730
SRR8749029	MeJA induced 9h	29.831
SRR8749030	Uninduced	20.059
SRR8749031	Uninduced	11.756
SRR8749032	Uninduced	21.701

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.390
SRR8400027	Control - Root	58.125