Gene detail

Gene detail information of Glyur000047s00003976

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35660.1	3.00E-158	FAD/NAD(P)-binding oxidoreductase family protein
NR	XP_007156581.1	0	hypothetical protein PHAVU_002G000800g [Phaseolus vulgaris]
COG	YP_002771203.1	2.00E-40	hypothetical protein BBR47_17220 [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|Q40412\|ABA2_NICPL	5.00E-24	Zeaxanthin epoxidase, chloroplastic (Precursor)
trEMBL	tr\|V7CH14\|V7CH14_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28575.1}

Sequence

Transcript Sequence

>Glyur000047s00003976.1
CGGCCACCGCTACTAGTCTACGTGGTCAAAGGATGAAACACACAACACAAACACCACGACTCAACTGTGTATTGCGTAGCAACAATCAATCGCAACTGTGAATTGAACAACATCCATCCATGGTTACACTTAAAACAATGACCTCGTCTTTTGTGTTTCTGAAATCTCCTACCTCGCTGCTTTGTCGTACCACAACAACATTCACGCGCGGTAATTGGTTTCGATGTGGGACTGTATCCCGCAGAAGTTACAATACCACCATCAAGGCTCAANCCAATGTCCGAAAGGAACAAGTTGTCATCGTGGGTGGTGGAATCGCAGGCCTCGCAACTGCTCTCACCCTTCACAGGCTTGGGGTTGGGTCCCTGGTATTGGAGCAGGCTGAGTCACTTCGAACCGGTGGAACTTCACTCACCCTTTCTAAGAACGGGTGGAGGGTACTTGATGTAATTGGAGTAGCAAATCATCTCAGAACTCAATTCTCTGAAATTCAAGGGATTGTGATAAAGTCCGAGGATGGGAGGGAACTACGCTCCTTCAATTTCAAAGAAGAGGATGTAAGTCAAGAGTTGCGTGGAGTGGAGAGGAGAGTACTTTTGGAAACCTTGGCTGGTGAGCTCCCTCGGGATACGATTCAATATTCTTCAAAGCTGGCAAGGGTTGAATCAAGTCCGNACGGGGATACCTTACTGGAACTCGCCGATGGCTCTAAGCTGCTTGCACAGATTGTAATAGGGTGCGACGGGATTGGATCGCCAATAGCAAANTGGATGGGGTTTTCTGAGCCCAAGTACGCTGGTTATTGTGCTATCCGTGGACTTGCTTCNTATTCAGAGGGACAGCCTTATGAGCCAAGAGTGAATTACATCTATGGTAAAGGGTTGCGAGCCGCATATGTTCCTGTTTCTCCTACCAAAGTTTACTGGTTTGTCTGCTTCAACAGTTCATCTCCAGGTCCAAAAATAACCGACCCATCGGNGCTAAAGAATCAAGCTAAGGAACTAGTCAGAAACTGGCCTCCGGAGCTATTAAACACAATAGACTCTACTCCAGATGACACTGTCATTTGGACTCCATTGGGGGATAGGTGGCTATGGCCAGCAACAAGTCCACCAGCTTCTGCAGGTAGAGTTGTGCTTGTTGGAGATGCGTGGCACCCAATGACCCCAAATCTTGGGCAAGGAGCTTGTTGTGCTCTTGAGGATGCAGTGGTTCTTGCTAAGAGGCTTGCAAAAGCCATCAAGTCTGATGACCCATCATCATCATCATCTGTGGAAGAAGCTTTTAGATCATATGGTACTGAAAGATGGCCTCGTGTATTTCCACTAACCATACGTGCATACCTTGTTGGTTCCCTCTTGCAGTGGGATAACCCAGTGGTGTGTTCCTTTAGGAACAATATTCTCATACCTAAGCTAGCAAGACTTAANCCATTGCTGGAGCATACAAATTTTACTTGTGAGGATCTATAAAGATGAAAAGAAGGATTTAGCTCGTAGCCTGGCACAGTGNAAGACGATGTTGTTCAAGGGATTTCATCATTTCTGCTCAATGCACTTCCCTAGTCCCCCCACCTTATGTATACCTGAATATATACACTTTATGTAATCAATGTAAAGAGAGATGCTAAATAAGTTCATTATGACAATAGGGTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	165173	168071	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003976.1	PF01494.14	FAD_binding_3	58	376	1.20E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.466
SRR1783600	control	1.517
SRR1783602	moderate drought stress	1.974
SRR1811619	moderate drought stress	2.036

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.152
DRR006520	Root Summer glycyrrhizin high producing strain	1.009
DRR006521	Root Winter glycyrrhizin high producing strain	2.717
DRR006522	Root Winter glycyrrhizin high producing strain	3.054
DRR006523	Root Summer glycyrrhizin low producing strain	1.968
DRR006524	Root Summer glycyrrhizin low producing strain	2.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.101
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.014

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.800
SRR2868004	Drought Stress (root)	18.539
SRR2967015	Control (root)	15.530

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.478
SRR9715740	Leaf	48.203
SRR9715741	Leaf	42.373
SRR9715739	Root	1.494
SRR9715742	Root	2.575
SRR9715743	Root	3.327

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.813
SRR8749028	MeJA induced 9h	11.308
SRR8749029	MeJA induced 9h	11.096
SRR8749030	Uninduced	94.601
SRR8749031	Uninduced	86.179
SRR8749032	Uninduced	34.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.806
SRR8400027	Control - Root	6.708