Gene detail

Gene detail information of Glyur000047s00003973

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16820.1	3.00E-159	alpha/beta-Hydrolases superfamily protein
NR	XP_004511725.1	0	PREDICTED: phospholipase A1-Ibeta2, chloroplastic-like [Cicer arietinum]
COG	YP_004895828.1	3.00E-13	hypothetical protein Acin_0446 [Acidaminococcus intestini RyC-MR95]
Swissprot	tr\|O23522\|PLA14_ARATH	0	Phospholipase A1-Ibeta2, chloroplastic (Precursor)
trEMBL	tr\|V7CEE1\|V7CEE1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28572.1}

Sequence

Transcript Sequence

>Glyur000047s00003973.1
ATGATGCAAATCAGCTCCACCGTACCCGCTCACAACCTTCACAAGTTTCAGGCAATAAGATGCCCCAGCTTCAGATGCCACGCTTCTTCTCCCTTAAACCCTTCCACCAAACTCCCCTCATCCCTTTCTTCTCTCAAATCTCAGAAGGCGTTGATCTCCACCGAGTCGACTCGGCTGCACCTCTCCAACCTCGACAAGTTCCTCGATAACCAAAAGCCCCTGGAAACAACCACCCAACAGCAGCAGCAACAACAACAACAACCCATCCAGAAATTAAACTACCCAAAGGACAAGAAAGGAAGAAACTTTCTCGAAGGCCTTAGCCTAGCAAAGCTATGGCCAGAGATGAAAGCCGCGGAGGAGATGTCCCCGCGCCACCTGAAGACCCTCCAGCGCCTCCTCTCCAAGACGGCGGAATATTCCCCGAGGAACATCCTCGGCGGAAGGTGGAAGGAGTACCACGGCAGCAACGACTGGAAAGGGATGCTTGATCCCCTCGACGAGAATCTCCGGCGAGAGGTCGTCAGATACGGCGAGTTCGTTCAGGCGGCGTATCACGCGTTCCACTCCGACCCGGCCATGTCAGCAGCCGAACCTCCCCAGCCACGCCACGTGGCGTCGCCCGATAGGTCCTACAGGGTGACCAAGAGCCTNTACGCCACGTCATCCATCGGGTTGCCCCAATGGGTCGATGACGTGGCACCGGATCTCGGGTGGATGACCCAGCGCTCAAGCTGGGTCGGGTACGTCGCGGTTTGCGAGGACAAGAGAGAGATCGCAAGGATGGGAAGGAGGGACATCGTGATCTCACTCCGCGGAACTTCCACGTGTCTCGAGTGGGCCGAGAATCTCAGGGCCCAGCTAATCGACTTGGACGAAGCTAGTAATACAGCCCAAACCCAGGGAAAGCCCAAAGTGGAGTGCGGGTTCTTGAGCCTGTACAAAACCAGAGGGGCCCACGTGCCTAGCATGTCCGAGTCGGTTGTGGAAGAGGTGAAGCGTCTCGTTGAGCTCTACAAAGGGGAAGAGCTGAGCATAACCGTCACGGGGCACAGCCTGGGTGCCACGCTGGCATTGTTGGTTGCCGATGAGATAAGCACGTGCGGGCCAGATGTGCCACCGGTGGCGGTTTTCTCCTTCGGTGGGCCACGTGTGGGTAACAAGGCCTTCGGGGACAGGCTCAACGCGAAAAACGTGAAGGTGCTTAGGATAGTGAACTCACAAGACGTGATTACGAGGGTCCCAGGGATATTCTTGAGCGAGGAGCTTGAGGAAAAAATTAGGAGCTCCAAGGTTGGTGGTGGTGTCGTGGACATGCTGGAAGAGAACACACCGTTGGCGTACTCACACGTTGGAACGGAGTTACGTGTCCATACCAAGATGTCGCCATACCTGAAGCCAGATGCTGACATGGCATGTTGTCATGACTTGGAGGCTTACCTACACCTGGTGGATGGGTTTTTGGCATCTAATTGTCCGTTCAGGGCTAATGCGAAGAGGAGCTTGGCCAGATTAATGCAAGATCAGAGTTCTAATGTGAAAAAGCTGTATACTAGCAGGGCTAAAGCCTTGAGTGTGAATCTTAATAGACAGAGGTCTATGTCCATGTCTACTTGTTTGCCCAGTCCATCATCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	158246	159883	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003973.1	PF01764.20	Lipase_3	268	417	1.90E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.876
SRR1783600	control	1.801
SRR1783602	moderate drought stress	2.362
SRR1811619	moderate drought stress	2.412

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	114.138
DRR006520	Root Summer glycyrrhizin high producing strain	113.454
DRR006521	Root Winter glycyrrhizin high producing strain	0.649
DRR006522	Root Winter glycyrrhizin high producing strain	0.616
DRR006523	Root Summer glycyrrhizin low producing strain	72.018
DRR006524	Root Summer glycyrrhizin low producing strain	72.477
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.365
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.331

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.420
SRR2868004	Drought Stress (root)	109.453
SRR2967015	Control (root)	432.389

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.525
SRR9715740	Leaf	70.590
SRR9715741	Leaf	143.262
SRR9715739	Root	439.477
SRR9715742	Root	454.450
SRR9715743	Root	447.053

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	122.697
SRR8749028	MeJA induced 9h	158.155
SRR8749029	MeJA induced 9h	123.491
SRR8749030	Uninduced	74.164
SRR8749031	Uninduced	76.797
SRR8749032	Uninduced	76.449

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.268
SRR8400027	Control - Root	56.385