Gene detail

Gene detail information of Glyur000047s00003964

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47240.1	6.00E-94	nudix hydrolase homolog 8
NR	XP_003538751.1	0	PREDICTED: nudix hydrolase 8-like isoform X1 [Glycine max]
COG	YP_944432.1	4.00E-30	ADP-ribose pyrophosphatase [Psychromonas ingrahamii 37]
Swissprot	tr\|Q8L7W2\|NUDT8_ARATH	2.00E-114	Nudix hydrolase 8
trEMBL	tr\|K7LMW3\|K7LMW3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G03890.2}

Sequence

Transcript Sequence

>Glyur000047s00003964.1
ATGGAGCTGAAAATGAAATCCTTGANTTCTGAGATTGTCCACGTGGGGAGAACCTATTCCACTGTGCCTTCATCAAATTTCAGAANCATTAGATTCTCTAGACAATTCAACTGTTTCGGTGGGTTATCTCTAAGGACTTGTTATGGTGCTTCTTATAACACTTACTTGGCTGATAAAGCTGTTATCAGTTCAGTTGGTGCAGATAATCTTGCGGCAGAAACGAGTTTCCATCATATTAATGGAATAAATGGCTCAACTTCGAGCTTGTATTGCAGAAATCTGAGAGTACTTGATTCCTTTGATGATGTGTATGAGGGGGTTGTCATTGATTCAGACCGGTTACCAGACAACCCATCAACCTTTGCACCTATCTTGCGATTTTCTCTCTCTCATTGGAAAAAAATGGAAGGCTTTCAANACCACCATGCAGAGCCAGGATATGTGATGTTAACATATTGGATTCCTGAAGGACCTTGCTTGCTGCCAGTCAATGCATCACATCAAGTAGGAGTTGGGGGATTTGTCATCAGTGACAACAATGAGGTGCTTGTAGTGCAAGAGAANCACTCTTCTCCTGCAATTCATGGTCTTTGGAAGATACCAACTGGATTCGTTCTTCAGTCTGAAATATATTGTCAGTCAGAGGAGATATATACAGGAGCCATAAGAGAAGTGAAGGAAGAAACTGGGATTGATACTGAGTTTNTTGAAGTCATAGCATTCAGGCATGCACATAATGTGGCATTCGGGAAGTCAGATTTGTTTTTCATCTGCATGTTAAGACCCCTCTCATCTGATATCATTGTTGATGATCTTNAAATTAAAGCCGCCAAGTGGATGCCCCTAGTTGAGTTTGTAGAGCAANCACTTGTCCAAGAAGATTTCATGTTCAAGAAGATCATAGATATCTGCATTGCTTGCATGGAAAAGCGTTATTGTGGCATGTCTGCTCATCAAATGATTTCCAAGTTTGATGGCAAATCATCTTCCCTATACTACAATGTCATCGACATGAAAAATATCAACTGTATTTGCAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	92910	95532	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003964.1	PF00293.23	NUDIX	168	290	3.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.070
SRR1783600	control	0.061
SRR1783602	moderate drought stress	0.073
SRR1811619	moderate drought stress	0.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.899
DRR006520	Root Summer glycyrrhizin high producing strain	0.908
DRR006521	Root Winter glycyrrhizin high producing strain	2.134
DRR006522	Root Winter glycyrrhizin high producing strain	2.430
DRR006523	Root Summer glycyrrhizin low producing strain	1.369
DRR006524	Root Summer glycyrrhizin low producing strain	1.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.276
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.906

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.159
SRR2868004	Drought Stress (root)	39.603
SRR2967015	Control (root)	65.715

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.616
SRR9715740	Leaf	2.524
SRR9715741	Leaf	2.601
SRR9715739	Root	0.179
SRR9715742	Root	1.864
SRR9715743	Root	0.908

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.243
SRR8749028	MeJA induced 9h	93.067
SRR8749029	MeJA induced 9h	99.204
SRR8749030	Uninduced	32.290
SRR8749031	Uninduced	106.081
SRR8749032	Uninduced	104.295

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.247
SRR8400027	Control - Root	4.035