Gene detail information of Glyur000047s00003962 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53110.1 | 1.00E-13 | RING/U-box superfamily protein |
| NR | XP_007157263.1 | 1.42E-111 | hypothetical protein PHAVU_002G056100g [Phaseolus vulgaris] |
| trEMBL | tr|V7CGF1|V7CGF1_PHAVU | 5.00E-112 | Uncharacterized protein {ECO:0000313|EMBL:ESW29257.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 85170 | 87335 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.752 |
| SRR1783600 | control | 1.711 |
| SRR1783602 | moderate drought stress | 0.913 |
| SRR1811619 | moderate drought stress | 0.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.603 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.577 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.033 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.568 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.449 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.216 |
| SRR2868004 | Drought Stress (root) | 12.311 |
| SRR2967015 | Control (root) | 11.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.391 |
| SRR9715740 | Leaf | 9.366 |
| SRR9715741 | Leaf | 9.245 |
| SRR9715739 | Root | 0.668 |
| SRR9715742 | Root | 3.578 |
| SRR9715743 | Root | 2.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.696 |
| SRR8749028 | MeJA induced 9h | 3.463 |
| SRR8749029 | MeJA induced 9h | 2.457 |
| SRR8749030 | Uninduced | 6.276 |
| SRR8749031 | Uninduced | 10.524 |
| SRR8749032 | Uninduced | 6.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.671 |
| SRR8400027 | Control - Root | 2.353 |