Gene detail information of Glyur000047s00003960 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16790.1 | 3.00E-22 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_006440250.1 | 6.10E-86 | hypothetical protein CICLE_v10019703mg [Citrus clementina] |
| trEMBL | tr|K7MLN1|K7MLN1_SOYBN | 1.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G15390.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 74055 | 75785 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000047s00003960.1 | PF05553.6 | DUF761 | 444 | 473 | 2.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.579 |
| SRR1783600 | control | 9.555 |
| SRR1783602 | moderate drought stress | 8.814 |
| SRR1811619 | moderate drought stress | 8.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.323 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.104 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.767 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.792 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.515 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.587 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.273 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.865 |
| SRR2868004 | Drought Stress (root) | 0.843 |
| SRR2967015 | Control (root) | 1.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.050 |
| SRR9715740 | Leaf | 0.752 |
| SRR9715741 | Leaf | 1.432 |
| SRR9715739 | Root | 0.605 |
| SRR9715742 | Root | 1.788 |
| SRR9715743 | Root | 1.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.046 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.177 |
| SRR8400027 | Control - Root | 3.538 |