Gene detail

Gene detail information of Glyur000047s00003959.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16780.1	3.00E-69	homeobox protein 2
NR	XP_003611347.1	5.35E-174	Homeobox-leucine zipper protein HOX17 [Medicago truncatula]
Swissprot	tr\|A5Y7H8\|HAT4_ARATH	5.00E-114	Homeobox-leucine zipper protein HAT4
trEMBL	tr\|B7FJ62\|B7FJ62_MEDTR	2.00E-174	Homeobox associated leucine zipper protein {ECO:0000313\|EMBL:AES94305.1}

Sequence

Transcript Sequence

>Glyur000047s00003959.1
AAGAGAGAGAAAGCAGGGTTGTATTATTTTGGGGTTGGGGTGCGGGGGCAAAAAACCCATGATTCAGATAATTGGGCTTTCCTGACATAAAGTCATGGATGAACTCACCACTCCCACTACCCCACATCTTCCCCTCCTTTCTATATATTCCCCTCCACCCTCCCTCTCCACTTCGTAATAAATCATTCATCCCAAATCTCCCTTTCTCTTTGATAAAAGCTCACTCTCTTTCACTCTCTCTCCCAAATCTTCTGCTAATTAAGTAACTTCAACTTCAAAACCCAGTCTTTGAGCTCACACACACACACACCACCAGCTCCTAGCTTGAAAGAAAAAGCAAAGGGCTTTAGTTCTCTGTCTTGTCTTACAAGGGGTTAGAGAATCATGACGGTTGAAAAGGAAGACTTGGGTTTGAGCCTAAGTTTGAGCTTCCCTCAGAATCCCCCAAATAATCCCCAGCAGCACCTGAATCTCATATTGTCTTCTACGACTCATTCCTCTTCTCCTAATTCTGGGTACAATCCACAGAAACCCTCTTGGAACGAGGCTTTCACTTCTTCAGATCGAGACTCGGAAACATGCAGAGGCAAACCTCGATGTTTGCTACGAGGAATAGATGTGAACCTTTTGCCATCAGGGGCAGAGTATGAAGAGGAAGCAGGGGTTTCATCTCCAAACAGCACGGTTTCGAGCGTGAGTGGTAAGCGTAGCGAGAGGGAGGAGGCCACTGGGGAAGATCATGACATGGAGAGAGCTTGTTCCAGAGGAATCAGTGACGAAGAAGACGGTGAAACCTCAAGGAAAAAACTCAGGCTCACCAAAGACCAGTCAATTATTCTCGAGGAGAGCTTCAAGGAGCACAACACTCTCAACCCCAAACAAAAGTTGGCACTTGCAAAGCAACTTGGCCTTCGTGCACGACAAGTAGAGGTGTGGTTCCAAAACCGAAGAGCAAGGACTAAGCTGAAGCAAACAGAGGTGGACTGTGAGTTCTTGAAACGGTGTTGCGAGAAACTGACGGAGGAAAACAGGCGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCAGATGACCCCACCAACAACCCTTACCATGTGCCCCTCTTGTGAGCGTGTCGCTGTTCCTCCTCCCTCCGCCGTTGATGTTGCCACGCGTCACCATCCCATGGCTCCAGCCCACCCTCGGCCCTTTCCCGTGGGCCCATGGGCCACCGCTGCTCCTATTTCCCACAGGTCCTTCGATACCCTCCGTCCCAGATCTTGACGTGTACGGCTGAACAATGACAAAATTTGAAGAGAAAAAAAAAGAAAAAGAAAAAGGAAAACGGTTGTAAGTTGTAACAGCGTTCCATGAATTCCGTGTTCAAAGTCGGGTCTAAGATATGGTGGTTAGAAGAAATGATTTTGTGGGTCTCTAATGTTTTGTACTAATTTGACCCATCGTCTTCTGTTGGTTTTTCGGGGGGGGGGGGGCATGACCCCATTCTAGTTAGGATTAATGGTAGACTTGTGTAAAGTGCAGTGATCTAATTTATTAAATACAGTTTCTTATGTTAGCAGTTTTTGTTCGCTAACCTAAAAGTCAAATATACATTTTGGATGATTGCTTTAGGATTGCAAATATGTCGTTTAAGTGTTCAAAAGATCCTTTTTTGATCTCAACGATGCGGGAAATTCGCAGGGATTAATTATGGGCTAGGTGCGAATATGACGAAAGGAAAAGGAAATAAAACATTTTTAAAGGAATTTGACCCCCAAAAAAAAAAGGAATTTGCTCCAAATGGCCAAACATTGGTTCAAGAAATTTGGGGCCTAATGGGCCCCAATTGATGATGCTTTCCAACCTTATTTCTATGGGTTATGTGAGCATTGACCTAAGATTTACGTGTTTTATTGAATTGCCCTCTCCCTTTCTGGTTGAATTGATTGGTTAGTGCAAATGCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00047	67867	70544	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000047s00003959.1	PF04618.7	HD-ZIP_N	1	113	2.70E-29
Glyur000047s00003959.1	PF00046.24	Homeobox	139	193	5.80E-16
Glyur000047s00003959.1	PF02183.13	HALZ	195	238	1.00E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.149
SRR1783600	control	7.179
SRR1783602	moderate drought stress	14.683
SRR1811619	moderate drought stress	14.381

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.708
DRR006520	Root Summer glycyrrhizin high producing strain	7.638
DRR006521	Root Winter glycyrrhizin high producing strain	1.585
DRR006522	Root Winter glycyrrhizin high producing strain	1.490
DRR006523	Root Summer glycyrrhizin low producing strain	35.512
DRR006524	Root Summer glycyrrhizin low producing strain	35.609
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.846
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.506

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.729
SRR2868004	Drought Stress (root)	32.015
SRR2967015	Control (root)	53.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.556
SRR9715740	Leaf	98.814
SRR9715741	Leaf	17.866
SRR9715739	Root	17.075
SRR9715742	Root	21.428
SRR9715743	Root	18.751

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.954
SRR8749028	MeJA induced 9h	1.944
SRR8749029	MeJA induced 9h	4.608
SRR8749030	Uninduced	4.043
SRR8749031	Uninduced	3.770
SRR8749032	Uninduced	2.793

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.174
SRR8400027	Control - Root	30.197