Gene detail

Gene detail information of Glyur000046s00004856

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61260.1	1.00E-31	Protein of unknown function (DUF761)
NR	XP_003593449.1	2.86E-99	Cotton fiber expressed protein [Medicago truncatula]
trEMBL	tr\|G7ILE0\|G7ILE0_MEDTR	1.00E-99	DUF4408 domain protein {ECO:0000313\|EMBL:AES63700.1}

Sequence

Transcript Sequence

>Glyur000046s00004856.1
CTCTACTCTGTATTTGGATTCTGCAACACACTCAAACCTTAACAACGATGCTCTATCTGAAACTGAAAGTTCTCCTCGTCTCCGTCGCCGTTATTTTCGCGGCGTTGGGGCTGAAGGAGTCTCTTCCACTCGTCACCACCCACCTCCCTCTCCTCTGGAGCTTCNTCCTCCTCTGTTTCAAACCTCCCTACCTCTATTTCACCGTCAACGCCATCATCATCTCCATCCTCGCCTCCTCCAGGTTCCACCGCCCCGCCGCCGAACCCAACCACCCATTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGACCCAACTCCTCCGCCCGTCGTCGAGGTGAAGGCCATCCTCGTCAACCGTTCAGCCGCGGTCGTCGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAGACGAAAGAAATCGACATAGGAATGCCTCTGAAGAGGATCAATTCGACGGAGATTGCACCGGAATATCCATCGCCGATTGATAAACCTCTCGTCTCTGCTAGGTTCAGTCACCGGAAACCTCTCAAATTCAGCCCTGAAGGTGGAAGGTCGTTGAGGGTGGCGAGGGCGCCGAAACGGCACGAGACGTTGGAGAACACGTGGAAGGCGATAACGGAGGGTCGATCGATGCCGTTAAGCAGGCACATGAAGAAGTGTGACACGTGGCAAAACCGCACCGACACGGGCCCACCGGAACCGGAAGATGAAGATGAAGAAGAGGCGACGACCACTAGTAGTAGCGTGTCTGTGTGTGAGACGTTCAACTTCAACAAGGCTGGGAGGCTGAGGAAAGAGCCCTCGCTGAGTCAAGACGAGTTGAATCGGCGCGTCGAAGCGTTCATTCACAAGTTCAACCAGCAGATGAGGTTGCAAAGACAAGAATCCTTGAATCACTACATGCACACATGATTAACCGGGGTACTAATTAATTAATCTCAACATATCTTATCCATATTGTAGAAACGTACGTGTTTTCTAGGAAGTAGGAACATAATTAAGATAATATTGACAAAAGAAAATAGTGTACTGTGTACATATATCTATTTGAATAGTTGTAGAGTAAGAGTATTTACATCATGTGTATTTTTTTAATTCTTTTTTTAATTTTTTGCCATATAAGTTATGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	433949	435249	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004856.1	PF14364.1	DUF4408	33	66	5.90E-09
Glyur000046s00004856.1	PF05553.6	DUF761	257	288	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.384
SRR1783600	control	0.350
SRR1783602	moderate drought stress	0.566
SRR1811619	moderate drought stress	0.588

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.858
DRR006520	Root Summer glycyrrhizin high producing strain	7.869
DRR006521	Root Winter glycyrrhizin high producing strain	2.670
DRR006522	Root Winter glycyrrhizin high producing strain	2.671
DRR006523	Root Summer glycyrrhizin low producing strain	8.949
DRR006524	Root Summer glycyrrhizin low producing strain	9.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.201
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.365

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.132
SRR2868004	Drought Stress (root)	1.605
SRR2967015	Control (root)	9.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.372
SRR9715740	Leaf	52.467
SRR9715741	Leaf	50.505
SRR9715739	Root	9.730
SRR9715742	Root	11.794
SRR9715743	Root	10.438

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	78.270
SRR8749028	MeJA induced 9h	29.222
SRR8749029	MeJA induced 9h	22.193
SRR8749030	Uninduced	4.155
SRR8749031	Uninduced	2.350
SRR8749032	Uninduced	2.502

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.225
SRR8400027	Control - Root	2.710