Gene detail information of Glyur000046s00004851 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49910.1 | 5.00E-64 | Translation protein SH3-like family protein |
| NR | XP_003593461.1 | 1.98E-97 | 60S ribosomal protein L26-1 [Medicago truncatula] |
| COG | NP_579542.1 | 5.00E-26 | 50S ribosomal protein L24 [Pyrococcus furiosus DSM 3638] |
| Swissprot | tr|P51414|RL261_ARATH | 8.00E-89 | 60S ribosomal protein L26-1 |
| trEMBL | tr|G7ILF2|G7ILF2_MEDTR | 7.00E-98 | Uncharacterized protein {ECO:0000313|EMBL:AFK40190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 408986 | 409546 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004851.1 | PF00467.24 | KOW | 51 | 82 | 2.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 219.618 |
| SRR1783600 | control | 227.116 |
| SRR1783602 | moderate drought stress | 158.142 |
| SRR1811619 | moderate drought stress | 161.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 295.997 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 287.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 127.965 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 128.605 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 288.431 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 289.856 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 149.149 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 151.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 743.471 |
| SRR2868004 | Drought Stress (root) | 395.180 |
| SRR2967015 | Control (root) | 352.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 382.500 |
| SRR9715740 | Leaf | 315.781 |
| SRR9715741 | Leaf | 252.671 |
| SRR9715739 | Root | 745.399 |
| SRR9715742 | Root | 500.163 |
| SRR9715743 | Root | 515.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1013.164 |
| SRR8749028 | MeJA induced 9h | 338.956 |
| SRR8749029 | MeJA induced 9h | 718.016 |
| SRR8749030 | Uninduced | 109.933 |
| SRR8749031 | Uninduced | 37.867 |
| SRR8749032 | Uninduced | 96.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 511.278 |
| SRR8400027 | Control - Root | 429.863 |