Gene detail

Gene detail information of Glyur000046s00004849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11190.1	2.00E-115	bifunctional nuclease i
NR	XP_004485719.1	0	PREDICTED: endonuclease 1-like [Cicer arietinum]
Swissprot	tr\|Q9SXA6\|ENDO1_ARATH	4.00E-144	Endonuclease 1 (Precursor)
trEMBL	tr\|G7ILF4\|G7ILF4_MEDTR	0	S1/P1 nuclease family protein {ECO:0000313\|EMBL:AES63715.1}

Sequence

Transcript Sequence

>Glyur000046s00004849.1
CAAAAACATAATAAGGTCATAGGAATTAAAGGTAATTAATTAGTTGAGAGATGGCTAGAGAGCTNGGAGGTTTGTGGGTGTCTCTCTCATTTGGATTTCTTTTGTTCTTGAGTTCTGACTTCATCAAAGTACCTGGTGTCATTGCTTGGAGCAAAGAGGGTCATGTGATGACATGTCAAATTGCGCAGGCACTTTTAAAGCCTGAGGCAACTGAAGCTGTGTACCATTTGTTACCTTCCCATGTCAAAGGTAACTTATCAGCCCTGTGTGTATGGCCTGACCAAATTAGGCACTGGCATAAATATAGGTGGACGAGTCCTCTTCATTTCATTGACACACCAGATGATAAATGTGGTTTCCAATATTCAAGGGACTGCCATGATTCACATGGTGTGAAGGATATGTGTGTTGCAGGAGCTATCAAAAATTTCACTTCTCAGCTTTTGCATTACAGAGAGGGGACAGCAGATCGTAGATATAATATGACTGAGGCATTACTGTTCTTGGCACACTTCATGGGAGATATTCACCAGCCAATGCATGTTGGATTCACCTCTGATGAAGGAGGAAACACAATAGATCTACGCTGGTATAGGCACAAATCTAATCTGCATCATGTGTGGGACAGAGAAATTATTCTGACAGCACTGGCAGACTACTATGATAAGGATGGAATCTGGTCAGATGATGTTCCTTCTTGGGAACATTGTAATGATATCTCTCGCTGTGTAAACAATTGGGCGAAAGAGAGCATACAAATAGCTTGCAAATGGGGTTACCAAGGAGTTGAATCTGGAATGACTCTGGCAGAGGAATACTTCGACTCAAGGATGCCATTTGTCATGAAACGAATTGCTCAAGGTGGAATTCGATTAGCCATGATTCTGAACCAGGTGTTTGGTGAATCTGAAGAAGGATTTGCAGCAGCAACCTAAGCAGACCCATCAACACATTANAACTACAAACATTAGTTGTTTAAATTCGTTGCCATTTTGTTAATAACCATAGGGTGTACCTAACTCAACACAGAGACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	405343	407482	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006308 DNA catabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0004519 endonuclease activity

GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004849.1	PF02265.11	S1-P1_nuclease	33	283	1.40E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.260
SRR1783600	control	1.287
SRR1783602	moderate drought stress	0.763
SRR1811619	moderate drought stress	0.875

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.927
DRR006520	Root Summer glycyrrhizin high producing strain	5.558
DRR006521	Root Winter glycyrrhizin high producing strain	3.479
DRR006522	Root Winter glycyrrhizin high producing strain	3.243
DRR006523	Root Summer glycyrrhizin low producing strain	13.460
DRR006524	Root Summer glycyrrhizin low producing strain	13.414
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.445
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.389

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.798
SRR2868004	Drought Stress (root)	10.011
SRR2967015	Control (root)	8.060

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.772
SRR9715740	Leaf	0.031
SRR9715741	Leaf	0.265
SRR9715739	Root	0.335
SRR9715742	Root	5.507
SRR9715743	Root	3.579

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.470
SRR8749028	MeJA induced 9h	2.159
SRR8749029	MeJA induced 9h	0.806
SRR8749030	Uninduced	3.899
SRR8749031	Uninduced	3.314
SRR8749032	Uninduced	1.037

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.089
SRR8400027	Control - Root	12.177