Gene detail

Gene detail information of Glyur000046s00004846.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54390.1	1.00E-118	HAL2-like
NR	XP_003593471.1	0	PAP-specific phosphatase HAL2-like protein [Medicago truncatula]
COG	YP_007205281.1	2.00E-66	3'(2'),5'-bisphosphate nucleotidase, HAL2 family [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q38945\|DPNPH_ARATH	1.00E-169	PAP-specific phosphatase HAL2-like
trEMBL	tr\|G7ILG2\|G7ILG2_MEDTR	0	3'(2'),5'-bisphosphate nucleotidase {ECO:0000313\|EMBL:AES63722.1}

Sequence

Transcript Sequence

>Glyur000046s00004846.1
GTGTCCCGAGGAAACAAGGTCCAATAAATAACGATTCAACACTCACCAGTCCATTATTGCTCCTATCCCATTGATCTTTTGCTTCTCCACCTTTTAATTTCACCATCAACAAAAAAAAAAGGGAAAAAGAAAAAAAGAAAAAATAATCAGAATTGAATATTGATAAGCAGTGGCCACATACCAAGAGAGATGGGTGCATTGCATTGTTGTATACCTAACGAACATGTCTTTATATCGTTCCAGCTTTGGTACAATAATCCCACGTACCTTGGAGCAGGGAAGGAGATCCGATGATATTGCCTCCTTCACANTCACCCACCTTGTACAACCAGGTTCCTGTTCCATCCCACTCCACCTTAAAGTCACCCACAACCACCACAATTACAACCCCTCGAGGCACATTGGTTCCGCATCGAAATTGGACCAAACCTCTTGTTGTTGTTGTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTGTCATGGAAGAGGAGCAGAAGGAGTTGGGTCTTTTCTCTGAAGCAGAAGAGTATTCCGAGGAATTGGGTGTTGCTGTGAGAGCTGTGCAGATGGCATGTTCCCTCTGCCAGAGAGTGCAGGACACTTTGATTTCCAAAACCAAGAGCAATCAACAGGTACAATCCAAGGATGACAATTCCCCGGTTACAGTTGCAGATTGGAGTGTCCAAGCAATAGTCAGCTGGATATTGTCCGAATGTCTAGAGAGTGAAAGTATCTCAATTGTAGCTGAAGAAGATGTTCAAACTCTCTCCAAGGCTAGTTCATCAGAACTATTAGAAGCTGTGGTTGAAACTGTGAATGAATGTCTAGCTGAAGCACCTCGATTTGGAGTTCAGAAGCCAAAATCACCTCTTGGGACTTCAGAAGTTCTTGAAATCATTAGTCGCTGTAACTCAACTGGGGGTCCCACCGGAAGATTTTGGGTACTGGATCCTGTTGATGGCACATTGGGGTTTGTGCGTGGAGATCAATATGCTATAGCTCTAGCACTTGTAGAGGATGGAGAAGTGGTGCTTGGTGTTCTTGGGTGCCCTAACTACCCAATGAGGAAGGAATGGTTAAGTTATCATCACCGCTATCATAGGATTGTATCCAAGATGACTCCTCCAACTTCTGAAAGTTGGAACAAAGGTTGTGTGCTATATGCTAAAAGGGGTAGTGGAAAGGCTTGGATGCAACCTCTGCTCCATGACAATAAGATGTTTGTGTGGCCAAACCATGCAAAACAAGTTTCTGTCTCTTCCATTGACAATCCATCACTGGCAACTTTTTGTGAACCAGTTGAGAAGGCCAATTCAAACCATTCTTTTACTGCAGGACTGGCTCACAGTGTTGGTCTCAGGAAACAACCATTAAGAGTATACAGCATGGTGAAATATGCAGCAATAGCTCGTGGAGATGCTGAGATTTTCATGAAGTTTGCAAGGGCTGGTTACAAGGAGAAAATATGGGATCATGCTGCAGGAGTTGTCATCATACAGGAAGCTGGTGGGGTGGTAACAGATGCAGGAGGATGTCCCCTAGACTTCTCAAAAGGCTTATATTTAGAAGGCCTTGATCGTGGTATAATTGCTTGTGCTGGAGCCTCGCTACATGGAAAGATCATCGATGCTGTTGATGCCAGCTGGGGCTCTTCTAGCCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	373943	377684	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01082	cysQ, MET22, BPNT1	EC:3.1.3.7	Sulfur metabolism	map00920

Gene Ontology

biological_process

GO:0006790 sulfur compound metabolic process

GO:0046854 phosphatidylinositol phosphorylation

molecular_function
GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004846.1	PF00459.20	Inositol_P	145	475	5.30E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.880
SRR1783600	control	3.702
SRR1783602	moderate drought stress	3.139
SRR1811619	moderate drought stress	3.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.961
DRR006520	Root Summer glycyrrhizin high producing strain	5.741
DRR006521	Root Winter glycyrrhizin high producing strain	4.925
DRR006522	Root Winter glycyrrhizin high producing strain	4.788
DRR006523	Root Summer glycyrrhizin low producing strain	5.207
DRR006524	Root Summer glycyrrhizin low producing strain	5.020
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.809
SRR2868004	Drought Stress (root)	7.757
SRR2967015	Control (root)	8.948

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.061
SRR9715740	Leaf	7.184
SRR9715741	Leaf	5.994
SRR9715739	Root	7.097
SRR9715742	Root	5.867
SRR9715743	Root	5.955

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.574
SRR8749028	MeJA induced 9h	3.302
SRR8749029	MeJA induced 9h	0.990
SRR8749030	Uninduced	5.818
SRR8749031	Uninduced	4.266
SRR8749032	Uninduced	5.079

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.826
SRR8400027	Control - Root	7.809