Gene detail information of Glyur000046s00004843 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61250.1 | 1.00E-95 | secretory carrier 3 |
| NR | XP_003545859.1 | 6.35E-156 | PREDICTED: secretory carrier-associated membrane protein [Glycine max] |
| Swissprot | tr|Q9ZTX0|SCAM_PEA | 4.00E-150 | Secretory carrier-associated membrane protein |
| trEMBL | tr|I1MEC0|I1MEC0_SOYBN | 2.00E-156 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G07480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 362511 | 366581 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004843.1 | PF04144.8 | SCAMP | 96 | 238 | 1.60E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.797 |
| SRR1783600 | control | 21.913 |
| SRR1783602 | moderate drought stress | 14.846 |
| SRR1811619 | moderate drought stress | 14.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.431 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.979 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.788 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.348 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.392 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.364 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.785 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 86.349 |
| SRR2868004 | Drought Stress (root) | 95.196 |
| SRR2967015 | Control (root) | 76.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.013 |
| SRR9715740 | Leaf | 27.677 |
| SRR9715741 | Leaf | 47.616 |
| SRR9715739 | Root | 29.122 |
| SRR9715742 | Root | 35.674 |
| SRR9715743 | Root | 31.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.093 |
| SRR8749028 | MeJA induced 9h | 72.899 |
| SRR8749029 | MeJA induced 9h | 74.803 |
| SRR8749030 | Uninduced | 78.421 |
| SRR8749031 | Uninduced | 92.482 |
| SRR8749032 | Uninduced | 102.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 75.766 |
| SRR8400027 | Control - Root | 69.799 |