Gene detail information of Glyur000046s00004839 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61215.1 | 4.00E-74 | bromodomain 4 |
| NR | XP_003547134.1 | 0 | PREDICTED: uncharacterized protein LOC100804245 [Glycine max] |
| trEMBL | tr|I1MEC5|I1MEC5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G07500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 343393 | 348118 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004839.1 | PF00439.20 | Bromodomain | 273 | 353 | 2.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.585 |
| SRR1783600 | control | 3.850 |
| SRR1783602 | moderate drought stress | 4.427 |
| SRR1811619 | moderate drought stress | 4.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.370 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.323 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.308 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.107 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.246 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.209 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.274 |
| SRR2868004 | Drought Stress (root) | 19.025 |
| SRR2967015 | Control (root) | 15.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.481 |
| SRR9715740 | Leaf | 11.482 |
| SRR9715741 | Leaf | 9.061 |
| SRR9715739 | Root | 4.014 |
| SRR9715742 | Root | 8.696 |
| SRR9715743 | Root | 8.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.341 |
| SRR8749028 | MeJA induced 9h | 23.735 |
| SRR8749029 | MeJA induced 9h | 15.120 |
| SRR8749030 | Uninduced | 14.947 |
| SRR8749031 | Uninduced | 28.140 |
| SRR8749032 | Uninduced | 28.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.643 |
| SRR8400027 | Control - Root | 8.405 |