Gene detail

Gene detail information of Glyur000046s00004826

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11080.1	0	serine carboxypeptidase-like 31
NR	XP_003593500.1	0	Serine carboxypeptidase-like protein [Medicago truncatula]
COG	NP_902682.1	2.00E-26	serine carboxypeptidase [Chromobacterium violaceum ATCC 12472]
Swissprot	tr\|O04084\|SCP31_ARATH	0	Serine carboxypeptidase-like 31 (Precursor)
trEMBL	tr\|G7INY9\|G7INY9_MEDTR	0	Serine carboxypeptidase-like protein {ECO:0000313\|EMBL:AES63751.1}

Sequence

Transcript Sequence

>Glyur000046s00004826.1
ATGAACAGATTCTACACTTTGGCTTTTATAGCACTGTTTTTATCTTTGAAGCCAATTATTTCTTCTAGAGATAGGAAATNGGGTGGTGGGAGAAAATTGAGCTATGGGGATAATGGTGATCATCTTGTGACTAACTTGCCTGGCCAGCCTCCTGCAGATTTCCAGCACTATGCTGGATACGTCACAGTGAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTTTTTGAGGCCATGACCAAACCTGAAGAGAAGCCATTGGTTTTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGCCCATTTTTAGTGGACACAGATGGCAAGGGCCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAACNTGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATACAACCAGTGAATATGCAAAATTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGCTCCTCAAATTTCCATCATATAGGACAAGGGAATTTTTCATAGCTGGGGAGAGCTATGCAGGAAANTATGTACCGGAGCTGGCTGAACTCATCCACGATAGAAGCAATGACCCTTCCCTTCATATTGATCTCAAGGGCATTATGCTGGGAAACCCTGAAACATCTGATGCTGAGGACTGGTTAGGACTGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACATACAAAACAATCAGAAGGAGTTGTGACTTCAACAGCAGTGATCCATGGAGTATTAAAGATTGTAGTGAAGGAGTGGATGAAGTGCTCAAACAGTACAACCAAATTGATATCTACAGCCTCTACACCTCTGTATGCTTTGCCAGCACAGCACGTTCAAATGATCAATCCATGCAAATGGTGATGAAGCGCTCATCTAAAATGATGCCTNGTGTCATGGGGGGTTATGACCCATGTTTGGATGACTATGCTAAAGCATTTTATAATAGACCAGATGTTCAAAAGGCCCTTCATGCCAGTGATGGTCACAATCTGAGGAATTGGAGTATTTGCAACGACGACATATTCAATGGTTGGGCTCAATCAAAGCGTTCTGTTATCCCAATTTACAGGAAGCTTATTTCAGCAGGACTTAGGATTTGGATTTACAGTGGAGACACTGATGGTAGAGTGCCAGTGTTGTCAACTAGATACAGCTTAAGTCTTCTTGGTTTGCCTATCACCAAGCAATGGAGGCCTTGGTACCATGAAAAGGAGGTTAGTGGGTGGTATCAAGAATATGAGGGGCTAACCTTTGCGACATTTAGAGGAGCTGGCCATGCAGTGCCCTGTTTTAAACCAAGTAATTCACTGGCGTTCTTCTCTTCCTTTCTTATTAACATGTCAAGTTTCTATGCTTTGGCTTTTACAGTACTGTTTTTATCTTCGAAGCTTGTTGTTTCTTCTAGAGATAGGAAATGGGGTGGTGGGAGAAAATTGAGNTATGGGGATAATGGTGATCATCTCGTGACTAACTTGCCTGGCCAGCCTCCTGTAAATTTCCAGCACTATGCTGGATATGTCACAGTGAATGAAANCAATGGAAGAGCACTCTTTTACTGGTTTTTTGAGGCCATGACCAANCCTGAAGAGAAGCCATTGGTTTTGTGGCTTAATGGAGGTCCAGGATGCTCTTCTGTGGGTTATGGAGCAACAGAGGAGATTGGCCCATTTTTAGTGGACACTGATGGCAAGGGCCTTAAATTTAATAACTTCTCATGGAACAGAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATACAACCAGTGAATATGAGAAACTGGGAGATGACTTCACAGCTAATGATACTTACACTTTTCTGCACAATTGGTTCCTCAAGTTTCCATCATATAGAACAAGGGAATTTTACATTGCTGGGGAGAGCTATGCAGGAAAGTANGTACCGGAGCTGGCTGAACTCATCCACGANNGGAACAATGACCCTTCCCTTCATATTGATCTCAAGGGCATTTTGCTGGGAAACCCTGCAACTTCTGATGCTGAAGACTGGTTAGGAATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACTCACAAAACAATCAGAAAGAGTTGTGACTTCAACAGTAGTGATCCATGGAGTAACAAAGATTGTAAACAAGGAGTGGATGAAATGCTCAACCAGTACAAACAAATTGATATGTACAGCCTCTACACCCCTGTCTGCTTGGCCAGTAAAGCAAGTTCAAATGATCAATCAATGCAAATGGTGATGAAGCGCTCATCTAAAATGGGAGAGGATGCTGGCATCATGGTTCCTCCCACTCTGATGAGCTTGCCCCAGTGGCTGGTGCTGCCAAGTAACCCAGAACAGCAGCTGGTGTTGGTGGGCAAAGGATTGTCTCAATGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	251284	262231	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004826.1	PF00450.17	Peptidase_S10	47	466	9.70E-137
Glyur000046s00004826.1	PF00450.17	Peptidase_S10	515	779	3.10E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.736
SRR1783600	control	0.785
SRR1783602	moderate drought stress	4.758
SRR1811619	moderate drought stress	4.645

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.721
DRR006520	Root Summer glycyrrhizin high producing strain	0.785
DRR006521	Root Winter glycyrrhizin high producing strain	0.125
DRR006522	Root Winter glycyrrhizin high producing strain	0.179
DRR006523	Root Summer glycyrrhizin low producing strain	1.086
DRR006524	Root Summer glycyrrhizin low producing strain	1.101
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.314
SRR2868004	Drought Stress (root)	0.313
SRR2967015	Control (root)	0.074

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.055
SRR9715740	Leaf	0.074
SRR9715741	Leaf	0.000
SRR9715739	Root	0.114
SRR9715742	Root	1.313
SRR9715743	Root	1.150

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.607
SRR8749028	MeJA induced 9h	0.606
SRR8749029	MeJA induced 9h	0.671
SRR8749030	Uninduced	0.791
SRR8749031	Uninduced	0.527
SRR8749032	Uninduced	0.569

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.123
SRR8400027	Control - Root	0.242