Gene detail information of Glyur000046s00004824 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14440.1 | 8.00E-72 | 3-hydroxyacyl-CoA dehydratase 1 |
| NR | XP_004485774.1 | 7.18E-140 | PREDICTED: carnitinyl-CoA dehydratase-like [Cicer arietinum] |
| COG | YP_003654055.1 | 8.00E-32 | enoyl-CoA hydratase/isomerase [Thermobispora bispora DSM 43833] |
| trEMBL | tr|I1M292|I1M292_SOYBN | 5.00E-133 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G31670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 245879 | 247027 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004824.1 | PF00378.15 | ECH | 7 | 205 | 7.30E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.406 |
| SRR1783600 | control | 43.891 |
| SRR1783602 | moderate drought stress | 52.414 |
| SRR1811619 | moderate drought stress | 52.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.194 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 54.990 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.401 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.198 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 81.834 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 78.861 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.075 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.624 |
| SRR2868004 | Drought Stress (root) | 26.135 |
| SRR2967015 | Control (root) | 28.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.150 |
| SRR9715740 | Leaf | 41.697 |
| SRR9715741 | Leaf | 51.276 |
| SRR9715739 | Root | 140.013 |
| SRR9715742 | Root | 72.451 |
| SRR9715743 | Root | 73.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.264 |
| SRR8749028 | MeJA induced 9h | 13.855 |
| SRR8749029 | MeJA induced 9h | 16.371 |
| SRR8749030 | Uninduced | 10.577 |
| SRR8749031 | Uninduced | 6.006 |
| SRR8749032 | Uninduced | 25.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.561 |
| SRR8400027 | Control - Root | 24.803 |