Gene detail

Gene detail information of Glyur000046s00004822.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61110.1	3.00E-92	NAC domain containing protein 25
NR	XP_007148205.1	3.59E-164	hypothetical protein PHAVU_006G188900g [Phaseolus vulgaris]
Swissprot	tr\|Q8GY42\|NAC25_ARATH	2.00E-116	NAC transcription factor 25
trEMBL	tr\|V7BQG4\|V7BQG4_PHAVU	1.00E-164	Uncharacterized protein {ECO:0000313\|EMBL:ESW20199.1}

Sequence

Transcript Sequence

>Glyur000046s00004822.1
CCTCATCACCACACTCATAACCTCCCCTCCCTAATTCTCTGATCCCAACCTTATTTTGATTCATTCATTAATTAGTGCCTTTTCCAACATTTGTTCACCAAATAAGAAAAGAAAGAGAAATTAAATTAAAGAANAAAGGTCCGAACAGAGCTTGTGGTGTGTGCATGAGAAGGAGGGAATTAATATTGAAGAGTACTCGTGATCNTATTCATGTATAGCATGGATTCATCTTTAGTGTCTCAGTCTCAACAGCACCCGCAGCTCCCACCCGGGTTTCGGTTCCACCCAACAGATGAGGAACTAGTTATTCACTACCTCAAGAGAAAAGCAGACTCTGCTCCTCTCCCTGTTGCAATCATAGCTGAGGTTGATCTCTACAAGTTTGACCCCTGGGAGCTCCCAAGTAAGGCAACGTTTGGGGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAACGGGGCGAGGCCAAACAGGGCAGCTACATCTGGGTATTGGAAAGCCACCGGGACTGACAAGCCTATACTAGCATCCTCTGATGGGAACCGCCGCAAAGTTGGGGTCAAGAAAGCCCTTGTCTTTTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACCAATTGGGTCATGCACGAGTATAGGCTTGCTGATAATAAGTACTCCTTAAATTCTTGCTCAAAGCCACCTTCTCTGCAGGTTGCTGATCCTGCACACAGTACCAAGAAGAACTCTTTGAGGCTTGACGATTGGGTATTGTGCCGAATATACAAGAAAAGCAACAGTAGCAGCTTGCCAAGGCTACCCATAATGGAGCAGGACAAGGGGGTCATGCTACCAACGATGTCAACTTTGTCAATGGCTAATAATAATATTACGTATCACAATTCCAACGATGACCACTTCTTTGATGGAATCTTAGCAGCTGATCAGAGCAGCATGCAAAATGGTTCAGATAATTCCCACCAAGTCTCAAAGGGAAACAACAACTTCAACTTCCCTATGAAACGAGCACTCCCACAATCTGCACAGCGATTCCATTGTGATCTTAACACTGGAAGCACCACCACCGCTGAGGAAAACAATTCTTTCGTTTCTCTGCTTAGCCAGATTCCACAGAGCACAACGTTTCACCCAAATGTGCTTCTTGGCCCTGTTGTTGGTGATGGAGTGTTGAGGCAACAGTTTCAACTTCCAAGCATAAATTGGAATGCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	238332	239911	+

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004822.1	PF02365.10	NAM	18	147	4.20E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.143
SRR1783600	control	1.061
SRR1783602	moderate drought stress	1.667
SRR1811619	moderate drought stress	1.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.750
DRR006520	Root Summer glycyrrhizin high producing strain	5.540
DRR006521	Root Winter glycyrrhizin high producing strain	11.128
DRR006522	Root Winter glycyrrhizin high producing strain	10.872
DRR006523	Root Summer glycyrrhizin low producing strain	5.784
DRR006524	Root Summer glycyrrhizin low producing strain	5.389
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.723
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.562

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.952
SRR2868004	Drought Stress (root)	2.583
SRR2967015	Control (root)	1.750

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.302
SRR9715740	Leaf	2.817
SRR9715741	Leaf	1.977
SRR9715739	Root	2.012
SRR9715742	Root	1.359
SRR9715743	Root	1.863

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.895
SRR8749028	MeJA induced 9h	49.691
SRR8749029	MeJA induced 9h	37.449
SRR8749030	Uninduced	1.047
SRR8749031	Uninduced	0.544
SRR8749032	Uninduced	0.546

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.837
SRR8400027	Control - Root	4.678